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News: Reminder: BioC2023 in-person registration closes 19th July!
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News: May 31st is the last day to nominate for Bioc2023 Awards!
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
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News: Last Week to Nominate for Bioc2023 Awards!
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News: Junior Developer or New Package Developer Award
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
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News: Bioconductor Long-term Contribution Award
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2.0 years ago • updated 24 months ago shepherl 4.1k
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News: Nominations for Bioconductor 2023 Awards!
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2.1 years ago • updated 24 months ago shepherl 4.1k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
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News: Seeking members for BioC2023 organizing committee
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2.3 years ago Maria Doyle ▴ 100
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News: Save the Date Bioc2023!
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2.5 years ago shepherl 4.1k
11 results • Page 1 of 1
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Comment: DiffBind - question on the use of filtered or unfiltered input data by sloperun3az • 0
Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…
Comment: compute_fasta_digest does not match Salmon index hash by sloperun3az • 0
The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …
Comment: parameters of filterByExpr by Paul Harrison ▴ 110
It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…
Comment: limma::voom vs edgeR::voomLmFit - when to use? by Gordon Smyth 52k
voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…
Comment: limma::voom vs edgeR::voomLmFit - when to use? by Geoff • 0
Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…
Votes
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
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