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News: Reminder: BioC2023 in-person registration closes 19th July!
Bioconductor BioC2023 Conference
9 months ago Maria Doyle ▴ 70
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 15 months ago by ▴ 70
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News: May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor Awards Bioc2023 Recognition
11 months ago shepherl 3.9k
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News: Reminder: BioC2023, Awards, TAB Deadline approaching - May 31st!
Bioconductor Community BioC2023
11 months ago Maria Doyle ▴ 70
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News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
11 months ago shepherl 3.9k
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News: Junior Developer or New Package Developer Award
Bioconductor Recognition Bioc2023 Awards
11 months ago shepherl 3.9k
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News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
12 months ago • updated 11 months ago shepherl 3.9k
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News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
12 months ago • updated 11 months ago shepherl 3.9k
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News: Nominations for Bioconductor 2023 Awards!
Awards Bioconductor Bioc2023 Recognition
12 months ago • updated 11 months ago shepherl 3.9k
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News: Seeking members for BioC2023 organizing committee
BioC2023 Bioconductor community
15 months ago Maria Doyle ▴ 70
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News: Save the Date Bioc2023!
Bioc2023 Conference Bioconductor
18 months ago • updated 17 months ago shepherl 3.9k
11 results • Page 1 of 1
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
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Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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