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Jitendra
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6.5 years ago
Jitendra
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3.8 years ago
Jitendra
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updated 3.9 years ago by
Sean Davis
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written 4.0 years ago by
Jitendra
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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
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I updated the above answer today.
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I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
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The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
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@gordonsmyth Noted, thank you very much.
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Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
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