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Bioconducter
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How to find regulatory region position and associated genes for CpG sites
Epigenetics
R
Bioconducter
23 months ago
Jitendra
▴ 10
0
votes
0
replies
753
views
normalisation options in RnBeads
Epigenetics
RnBeads
R
Bioconducter
2.9 years ago
Jitendra
▴ 10
4
votes
8
replies
3.2k
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R package installation error
HPC
R
Bioconducter
2.9 years ago
Jitendra
▴ 10
0
votes
3
replies
1.9k
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Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 3.0 years ago by
Sean Davis
21k • written 3.1 years ago by
Jitendra
▴ 10
0
votes
0
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868
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taxonomy download from NCBI based on geneID
biomartr
Bioconducter
5.6 years ago
Jitendra
▴ 10
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Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
interesting. it could be since this is not your installation that it was installed by an admin that you do not have access to perform this…
Comment: Overcoming confounding in batch effect correction
by
ATpoint
★ 4.6k
Hi, this is not related to Bioconductor directly. And no, you cannot correct anything because in your own batch you only have a single samp…
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Comment: Overcoming confounding in batch effect correction
by
mimi
• 0
https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Votes
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
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