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Bioconducter
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R package installation error
HPC
R
Bioconducter
2.1 years ago
Jitendra
▴ 10
0
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3
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1.5k
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Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 2.2 years ago by
Sean Davis
21k • written 2.3 years ago by
Jitendra
▴ 10
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0
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697
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taxonomy download from NCBI based on geneID
biomartr
Bioconducter
4.8 years ago
Jitendra
▴ 10
0
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0
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562
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normalisation options in RnBeads
Epigenetics
RnBeads
R
Bioconducter
2.1 years ago
Jitendra
▴ 10
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0
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557
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How to find regulatory region position and associated genes for CpG sites
Epigenetics
R
Bioconducter
14 months ago
Jitendra
▴ 10
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Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
Answer: Help with error using camera() in limma
by
James W. MacDonald
65k
The first step should be to read the help page, which says ``` Usage: ## Default S3 method: camera(y, index, design, cont…
Comment: Assist me in determining whether the analysis process using the limma package ha
by
James W. MacDonald
65k
The description of the analysis says there are 120 genes at a 1.5 fold change and a p<0.05. They don't mention any multiplicity correction.…
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Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
Comment: Why p value inconsistent when using different number of pathway score?
Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
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James W. MacDonald
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