Showing : Biophysics • reset
0
votes
0
replies
1.9k
views
R: How to prpare the input data to writeFASTA ? Examples of CharacterToFASTArecords ...
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
0
votes
0
replies
1.7k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.0 years ago Birgit Hauer ▴ 30
0
votes
6
replies
1.5k
views
R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 14.8 years ago by ★ 3.4k • written 14.8 years ago by ▴ 870
0
votes
4
replies
1.4k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Biostrings biomaRt miRNA Biophysics Biostrings biomaRt
14.8 years ago mauede@alice.it ▴ 870
0
votes
1
reply
1.3k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
updated 11.1 years ago by ★ 1.2k • written 11.1 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.2 years ago Birgit Hauer ▴ 30
0
votes
1
reply
1.2k
views
ReadAffy problems
Genetics Biophysics affy Genetics Biophysics affy
updated 21.0 years ago by ★ 2.3k • written 21.0 years ago by ▴ 30
0
votes
0
replies
1.2k
views
xzfile() cannot open the connection, lzma encoder error 5.
Biophysics Biophysics
11.1 years ago Wang Ming ▴ 20
0
votes
0
replies
1.2k
views
Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.2 years ago Birgit Hauer ▴ 30
0
votes
1
reply
1.2k
views
R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 870
0
votes
0
replies
1.2k
views
importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
11.3 years ago Pan Du ▴ 440
0
votes
0
replies
1.1k
views
DEG Calling on Transcripts vs Genes
Biophysics limma Biophysics limma
10.5 years ago Yogesh Saletore ▴ 10
0
votes
0
replies
1.1k
views
SAM warning
Biophysics Alignment Annotation Normalization Cancer hgu133plus2 probe affy vsn MBCB vsn
15.3 years ago elliot harrison ▴ 230
0
votes
0
replies
1.1k
views
R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
14.8 years ago michael watson IAH-C ★ 3.4k
0
votes
3
replies
993
views
R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
0
votes
1
reply
878
views
Help with creating a figure
Biophysics Biophysics
updated 15.9 years ago by ▴ 340 • written 15.9 years ago by ★ 13k
0
votes
2
replies
874
views
Bizarre artifacts in MA plots for ChIP-chip data
Microarray Biophysics Microarray Biophysics
updated 15.6 years ago by ★ 2.4k • written 15.6 years ago by ★ 13k
0
votes
0
replies
863
views
R: R: how to use writeFASTA in modality "append"
Biophysics Biophysics
14.8 years ago mauede@alice.it ▴ 870
0
votes
0
replies
697
views
Filtering before differential expression analysis of microarrays - New paper out
Biophysics Normalization affy vsn Biophysics Normalization affy vsn
15.3 years ago Steve Lianoglou ★ 13k
0
votes
0
replies
575
views
Preprocessing affymetrix array data
Biophysics Biophysics
15.6 years ago Abdi Ali ▴ 20
0
votes
0
replies
565
views
Job: Flatiron Research Fellow, Structural and Molecular Biophysics
Biophysics
2.3 years ago simonsF.careers • 0
21 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Votes
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
Germany, just now
Pakistan, 1 minute ago
Pakistan, 12 minutes ago
United States, 15 minutes ago
Belgium, 19 minutes ago
Traffic: 932 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6