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Answer: Reproducibility of code in various Bioconductor versions
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Gordon Smyth
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I'm not familiar with the packages you mention, but the whole reason why Bioconductor has versions is that code and annotation change. Code…
Comment: Question on processing compound protein groups in limpa
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JKim
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Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
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Gordon Smyth
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Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
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Gordon Smyth
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limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale.
From what I read (<https://…
Comment: A problem occurs when running the monocle2
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a2a2hset32aa
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Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
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