Bioconductor BitSeq

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1.7k

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BitSeq bitseq rnaseq

updated 10.1 years ago by Ryan C. Thompson ★ 7.9k • written 10.1 years ago by Sam McInturf ▴ 300

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1.4k

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bitseq paired samples

updated 10.3 years ago by panagiotis.papastamoulis ▴ 30 • written 10.3 years ago by MariaJoseG • 0

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4.4k

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dexseq bitseq cuffdiff Differential exon usage isoforms

10.4 years ago elle ▴ 10

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bitseq spliceR

10.5 years ago elle ▴ 10

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1.2k

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BitSeq

updated 10.5 years ago by Antti Honkela ▴ 50 • written 10.5 years ago by dietmar.pils • 0

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1.8k

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dexseq bitseq spliceR

10.5 years ago elle ▴ 10

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1.6k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 12.6 years ago by Maayan Kreitzman ▴ 30 • written 12.6 years ago by Peter Glaus ▴ 70

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1.4k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 12.6 years ago by Peter Glaus ▴ 70 • written 12.6 years ago by Maayan Kreitzman ▴ 30

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1.4k

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Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq

12.7 years ago Peter Glaus ▴ 70

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1.3k

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RNASeq safe BitSeq RNASeq safe BitSeq

12.8 years ago Dave Gerrard ▴ 40

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1.3k

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RNASeq BitSeq RNASeq BitSeq

updated 12.8 years ago by Peter Glaus ▴ 70 • written 12.8 years ago by Dave Gerrard ▴ 40

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2.2k

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BitSeq BitSeq

updated 13.0 years ago by Peter Glaus ▴ 70 • written 13.0 years ago by Fatemehsadat Seyednasrollah ▴ 260

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1.1k

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BitSeq BitSeq

13.0 years ago Fatemehsadat Seyednasrollah ▴ 260

13 results • Page 1 of 1

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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