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BitSeq
•
reset
5
votes
18
replies
3.2k
views
Incongruencies between DEXSeq and BitSeq/Cuffdiff
dexseq
bitseq
cuffdiff
Differential exon usage
isoforms
9.0 years ago • updated 8.9 years ago
elle
▴ 10
1
vote
5
replies
1.7k
views
using BitSeq data as input for spliceR
bitseq
spliceR
9.0 years ago
elle
▴ 10
0
votes
6
replies
1.7k
views
BitSeq input data error
BitSeq
BitSeq
updated 11.5 years ago by
Peter Glaus
▴ 70 • written 11.5 years ago by
Fatemehsadat Seyednasrollah
▴ 260
0
votes
0
replies
1.5k
views
Differential expression workflow for alternative splicing
dexseq
bitseq
spliceR
9.0 years ago
elle
▴ 10
2
votes
3
replies
1.3k
views
Technical and biological replates in BitSeq
BitSeq
bitseq
rnaseq
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
Sam McInturf
▴ 300
0
votes
2
replies
1.3k
views
BitSeq transcript IDs
Alignment
PROcess
BitSeq
Alignment
PROcess
BitSeq
updated 11.1 years ago by
Maayan Kreitzman
▴ 30 • written 11.1 years ago by
Peter Glaus
▴ 70
1
vote
1
reply
1.1k
views
BitSeq with paired samples
bitseq
paired samples
updated 8.8 years ago by
panagiotis.papastamoulis
▴ 30 • written 8.8 years ago by
MariaJoseG
• 0
0
votes
0
replies
1.1k
views
BitSeq: Required input for 3' bias correction on transcripts.
Transcription
RNASeq
safe
BitSeq
Transcription
RNASeq
safe
BitSeq
11.3 years ago
Peter Glaus
▴ 70
0
votes
1
reply
1.1k
views
BitSeq getExpression crash
Alignment
PROcess
BitSeq
Alignment
PROcess
BitSeq
updated 11.1 years ago by
Peter Glaus
▴ 70 • written 11.1 years ago by
Maayan Kreitzman
▴ 30
0
votes
0
replies
1.0k
views
BitSeq: Required input for 3' bias correction on transcripts.
RNASeq
safe
BitSeq
RNASeq
safe
BitSeq
11.3 years ago
Dave Gerrard
▴ 40
0
votes
1
reply
974
views
BitSeq: Required input for 3' bias correction on transcripts.
RNASeq
BitSeq
RNASeq
BitSeq
updated 11.3 years ago by
Peter Glaus
▴ 70 • written 11.3 years ago by
Dave Gerrard
▴ 40
0
votes
1
reply
946
views
BitSeq getExpression (type=counts) - (why all 1 or higher)
BitSeq
updated 9.0 years ago by
Antti Honkela
▴ 50 • written 9.0 years ago by
dietmar.pils
• 0
0
votes
0
replies
856
views
SamBit input data error
BitSeq
BitSeq
11.5 years ago
Fatemehsadat Seyednasrollah
▴ 260
13 results • Page
1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R
by
Patrycja
▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice!
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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