Bioconductor BitSeq

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3.2k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.0 years ago • updated 8.9 years ago elle ▴ 10

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1.7k

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bitseq spliceR

9.1 years ago • updated 9.0 years ago elle ▴ 10

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1.3k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.1 years ago by Maayan Kreitzman ▴ 30 • written 11.1 years ago by Peter Glaus ▴ 70

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1.1k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.2 years ago by Peter Glaus ▴ 70 • written 11.2 years ago by Maayan Kreitzman ▴ 30

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1.3k

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BitSeq bitseq rnaseq

updated 8.7 years ago by Ryan C. Thompson ★ 7.9k • written 8.7 years ago by Sam McInturf ▴ 300

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1.7k

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BitSeq BitSeq

updated 11.6 years ago by Peter Glaus ▴ 70 • written 11.6 years ago by Fatemehsadat Seyednasrollah ▴ 260

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984

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RNASeq BitSeq RNASeq BitSeq

updated 11.3 years ago by Peter Glaus ▴ 70 • written 11.3 years ago by Dave Gerrard ▴ 40

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955

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BitSeq

updated 9.1 years ago by Antti Honkela ▴ 50 • written 9.1 years ago by dietmar.pils • 0

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1.1k

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bitseq paired samples

updated 8.8 years ago by panagiotis.papastamoulis ▴ 30 • written 8.8 years ago by MariaJoseG • 0

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865

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BitSeq BitSeq

11.6 years ago Fatemehsadat Seyednasrollah ▴ 260

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1.0k

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RNASeq safe BitSeq RNASeq safe BitSeq

11.3 years ago Dave Gerrard ▴ 40

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1.5k

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dexseq bitseq spliceR

9.1 years ago elle ▴ 10

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1.1k

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Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq

11.3 years ago Peter Glaus ▴ 70

13 results • Page 1 of 1

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Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2 by BioinfGuru ▴ 30

I would use biomaRt. This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…

Comment: Volcano plot of scRNA-seq data not "centered" by ATpoint ★ 4.2k

My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …

Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Votes

A: Analyzing data without replicates using DiffBind

DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol

DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

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Popular Question to Robert Castelo ★ 3.3k