Showing : CGH • reset
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JOB: Microarray Bioinformatics Specialist
Microarray Cancer CGH cycle Microarray Cancer CGH cycle
17.6 years ago Robert Castelo ★ 3.4k
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5
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2.0k
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understanding GOstats p-value
Annotation GO Cancer CGH GOstats Annotation GO Cancer CGH GOstats
updated 17.8 years ago by ▴ 290 • written 17.8 years ago by ▴ 740
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Array CGH from A-Z
CGH CGH
17.9 years ago Srinivas Iyyer ▴ 600
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8
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2.7k
views
segmentation aCGH data
Normalization CGH probe limma DNAcopy snapCGH Normalization CGH probe limma DNAcopy
18.0 years ago jhs1jjm@leeds.ac.uk ▴ 230
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1
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1.6k
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Bioconductor 2.1 is released
SNP Microarray SAGE Annotation Bayesian Regression GUI CGH hgu95av2 graph Rgraphviz SNP
18.0 years ago Hervé Pagès 16k
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4
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1.9k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 18.0 years ago by ▴ 230 • written 18.0 years ago by ▴ 110
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7
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2.1k
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processCGH in snapCGH package
CGH snapCGH CGH snapCGH
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 230
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4
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1.6k
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Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 230
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7
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2.4k
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segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 18.1 years ago by ▴ 250 • written 18.1 years ago by ▴ 440
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4
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1.5k
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create CNA object in DNAcopy package with agilent data
CGH CGH
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 230
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1
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1.4k
views
DNAcopy package, craeting CNA object
CGH marray DNAcopy CGH marray DNAcopy
updated 18.1 years ago by 21k • written 18.1 years ago by ▴ 230
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8
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2.2k
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annotation files for agilent: a bit off-topic
Annotation CGH Annotation CGH
updated 18.2 years ago by ▴ 100 • written 18.2 years ago by ★ 1.2k
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1.5k
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CGH analysis warning messages
Cancer CGH snapCGH Cancer CGH snapCGH
updated 18.3 years ago by ▴ 70 • written 18.3 years ago by ★ 1.9k
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affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.6 years ago Dick Beyer ★ 1.4k
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how to analyse single chromosome array CGH data using HMM in aCGH library?
aCGH CGH aCGH aCGH CGH aCGH
18.6 years ago Ruppert Valentino ▴ 270
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864
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what is the equivalent of normalize.qspline for 2 color arrays?
Normalization CGH affy limma Normalization CGH affy limma
18.7 years ago Betty Gilbert ▴ 50
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5
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2.2k
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from BAC name to list of genes in that BAC
CGH BAC CGH BAC
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 90
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2
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1.5k
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imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 18.7 years ago by 21k • written 18.7 years ago by ▴ 50
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1
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888
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aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 18.9 years ago by 21k • written 18.9 years ago by ★ 1.9k
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aCGH
aCGH CGH impute aCGH aCGH CGH impute aCGH
18.9 years ago Sean Davis 21k
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1
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1.4k
views
How to use snapCGH with Nimblegen data
CGH snapCGH CGH snapCGH
updated 19.0 years ago by ▴ 310 • written 19.0 years ago by ▴ 30
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1
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1.2k
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Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 19.1 years ago by ▴ 40 • written 19.1 years ago by ▴ 140
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Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
19.2 years ago Aedin Culhane ▴ 510
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Analysing categorical CGH data
Clustering Cancer CGH made4 Clustering Cancer CGH made4
19.2 years ago Richard Birnie ▴ 10
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840
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spotsegmentation
CGH spotSegmentation CGH spotSegmentation
19.3 years ago Abdel Benajjou ▴ 10
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3
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1.3k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 19.3 years ago by ▴ 140 • written 19.3 years ago by ▴ 310
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1.1k
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scripts to process array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
19.3 years ago Steven McKinney ▴ 310
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3
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1.5k
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[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 19.4 years ago by ▴ 190 • written 19.4 years ago by 21k
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High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27
SNP Microarray Proteomics Normalization Classification Cancer CGH Yeast SNP Microarray
19.6 years ago Mark Reimers ▴ 70
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767
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lowess, quantreg, waveslim
CGH CGH
20.2 years ago Sorani, Marco ▴ 30
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1
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1.0k
views
error message from GLAD
CGH GLAD CGH GLAD
updated 20.2 years ago by ▴ 20 • written 20.2 years ago by ▴ 30
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0
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1.3k
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
20.6 years ago Yi, Andrew ▴ 20
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848
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cgh
CGH CGH
20.8 years ago Auer Michael ▴ 250
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1.6k
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Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
21.3 years ago grischa tödt ▴ 30
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1.8k
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Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 21.4 years ago by ★ 13k • written 21.4 years ago by ▴ 810
85 results • Page 2 of 2
Recent ...
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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