Showing : Cheminformatics • reset
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Comparing compounds in CheminneR
Cheminformatics ChemmineR ChemmineDrugs
8 months ago Sean • 0
0
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1
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821
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ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf ChemmineOB Cheminformatics ChemmineR
2.7 years ago adelenelai • 0
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901
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Where can I locate the bioassayR database?
bioassayr chemmineR cheminformatics
5.2 years ago Anthony Nash ▴ 20
3
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1
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691
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Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
limma edger deseq2 cheminformatics
updated 5.7 years ago by ★ 28k • written 5.7 years ago by • 0
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3
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1.1k
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cellHTS2 importa and analysing data from chemical compound screening
cellhts2 cheminformatics
updated 7.4 years ago by ▴ 160 • written 7.4 years ago by ▴ 810
1
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3
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1.9k
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Bioc 3.3 Windows 10 eiR package fails to install
software error R cheminformatics package installation eiR
updated 7.9 years ago by • 0 • written 7.9 years ago by • 0
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1.2k
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BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi
10.8 years ago Martin Morgan 25k
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1.3k
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'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics Cheminformatics Visualization xcms Metabolomics Cheminformatics Visualization
14.2 years ago Gabriella Rustici ▴ 60
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877
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
15.9 years ago Thomas Girke ★ 1.7k
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951
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
16.6 years ago Thomas Girke ★ 1.7k
10 results • Page 1 of 1
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Comment: Store output of matchPWM() by James W. MacDonald 65k
Here's a self contained reproducible example, using part of the example in `?matchPWM` ``` > library(Biostrings) > data(HNF4alpha) > libr…
Comment: DEseq2 coefficient by JKim • 0
Hi Dr. Love, I'm sorry to ask another question to my old post. If the design isn't balanced, the interpretation of coefficients will be…
Comment: Store output of matchPWM() by mat149 ▴ 70
out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) Error in do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) : '…
Answer: Store output of matchPWM() by James W. MacDonald 65k
Something like this? ``` ind <- as.logical(sapply(hitlist, length)) out <- do.call(c, lapply(hitlist, function(x) as(x, "IRanges"))) …
Answer: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
This has been asked before, but with a multi factor design, the LFC for coefficient X adjust for the others, in a way that is often hard to…
Votes
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
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