Bioconductor Cheminformatics

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Cheminformatics ChemmineR ChemmineDrugs

2.5 years ago Sean • 0

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cheminf ChemmineOB Cheminformatics ChemmineR

4.5 years ago adelenelai • 0

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bioassayr chemmineR cheminformatics

7.0 years ago Anthony Nash ▴ 20

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limma edger deseq2 cheminformatics

updated 7.5 years ago by Aaron Lun ★ 29k • written 7.5 years ago by perdedorium • 0

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cellhts2 cheminformatics

updated 9.2 years ago by Joseph Barry ▴ 160 • written 9.2 years ago by Andreia Fonseca ▴ 810

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software error R cheminformatics package installation eiR

updated 9.7 years ago by khoran ▴ 10 • written 9.7 years ago by rjrich • 0

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Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi

12.6 years ago Martin Morgan 25k

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1.6k

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Metabolomics Cheminformatics Visualization xcms Metabolomics Cheminformatics Visualization

16.0 years ago Gabriella Rustici ▴ 60

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1.2k

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Cheminformatics Clustering Cheminformatics Clustering

17.6 years ago Thomas Girke ★ 1.7k

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1.2k

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Cheminformatics Clustering Cheminformatics Clustering

18.4 years ago Thomas Girke ★ 1.7k

10 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Popular Question to Peter Hickey ▴ 760