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ChemmineOB
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97
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Problem loading ChemmineOB
ChemmineOB
updated 3 months ago by
shepherl
3.4k • written 3 months ago by
juliev
• 0
1
vote
5
replies
3.9k
views
ChemmineOB cannot find installed open-babel
ChemmineOB
openbabel
updated 10 months ago by
dave
• 0 • written 8.3 years ago by
yun YAN
▴ 20
0
votes
1
reply
424
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
18 months ago
adelenelai
• 0
0
votes
0
replies
628
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
20 months ago
sukissqz
• 0
3
votes
4
replies
910
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 2.0 years ago by
Thomas Girke
★ 1.7k • written 2.2 years ago by
teresadijor
• 0
0
votes
2
replies
649
views
Error in installing ChemmineOB
software error
ChemmineOB
rand.h
macOS
updated 2.4 years ago by
khoran
• 0 • written 2.4 years ago by
bio.sailu
• 0
0
votes
1
reply
631
views
ChemmineOB Installation RHEL
ChemmineOB
Linux
Installation
3.9 years ago
jandrosavich
• 0
0
votes
2
replies
1.0k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
5.9 years ago
elisa.micarelli
▴ 10
0
votes
2
replies
1.1k
views
Rcpi issue - ChemmineOB Fp4 fingerprints
fingerprint
FP4
ChemmineOB
Rcpi
updated 6.2 years ago by
Nan Xiao
• 0 • written 7.3 years ago by
josephjmcdonald
• 0
9 results • Page
1 of 1
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Answer: struggling to create a heatmap
by
ATpoint
★ 2.1k
I am reluctant to read through that wall of code. Here is what would work. Note that prefiltering makes sense before, not after running `DE…
Answer: collapseReplicates error after tximeta
by
Michael Love
39k
The issue is that `collapseReplicates` just collapses `counts` and doesn't account for multiple assays which you need for e.g. Swish or oth…
Comment: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
by
ATpoint
★ 2.1k
That having said, I recommend to inspect the MA-plots (`plotMA()`), at best the ones produced right from `res <- results(dds); plotMA(res)`…
Answer: Which genes are outliers in DESeq2?
by
ATpoint
★ 2.1k
You can take over some of the lines from `results()` to find them easily: ```r suppressPackageStartupMessages(library(DESeq2)) set.s…
Answer: Which genes are outliers in DESeq2?
by
Michael Love
39k
Outliers will have high maxCooks values in `mcols(dds)` -- the threshold is `qf(.99, p, n - p)` where n is sample size and p is number of c…
Votes
Significant reporter activity with mpralm function
Answer: I cannot install annotables package in Rstudio (macOS)
Answer: log2 of normalized counts for further analyzes
Answer: Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it
Clarification of what DESeq2::estimateSizeFactors controlGenes does and when it should *not* be used
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Guido Hooiveld
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to
James W. MacDonald
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Michael Love
39k
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twtoal
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