Showing : Chippeakanno • reset
0
votes
0
replies
1.1k
views
ChIPpeakAnno: using findOverlappingPeaks for non-overlapping peaks
GO annotate ChIPpeakAnno GO annotate ChIPpeakAnno
15.0 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
988
views
ChIPpeak Anno RangedData question
GO ChIPpeakAnno GO ChIPpeakAnno
15.1 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.6k
views
Need assistance with the file preparation for ChIPpeakAnno. (Jennifer Yang from University of California, Santa Barbara)
Annotation annotate ChIPpeakAnno Annotation annotate ChIPpeakAnno
15.1 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
917
views
Gene Name annotation
Annotation annotate convert ChIPpeakAnno Annotation annotate convert ChIPpeakAnno
15.1 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.1k
views
ChIPpeakAnno question
ChIPpeakAnno ChIPpeakAnno
updated 15.1 years ago by ▴ 20 • written 15.1 years ago by ★ 4.3k
0
votes
0
replies
931
views
Regarding to ChIPpeakAnno package
IRanges ChIPpeakAnno IRanges ChIPpeakAnno
15.1 years ago Julie Zhu ★ 4.3k
0
votes
7
replies
2.5k
views
ChIPpeakAnno::getEnrichedGo crashes but I don't know why
annotate ChIPpeakAnno annotate ChIPpeakAnno
updated 15.1 years ago by ★ 4.3k • written 15.1 years ago by ▴ 40
0
votes
0
replies
1.1k
views
Regarding to ChIPpeakAnno package
ChIPpeakAnno ChIPpeakAnno
15.1 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
878
views
A question about outputting GO annotation
Annotation GO ChIPpeakAnno Annotation GO ChIPpeakAnno
15.2 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.6k
views
totalTest number in ChipPeakAnno
ChIPpeakAnno ChIPpeakAnno
updated 15.2 years ago by ▴ 30 • written 15.2 years ago by ▴ 410
0
votes
0
replies
984
views
ChIPpeakAnno
ChIPpeakAnno ChIPpeakAnno
15.3 years ago Julie Zhu ★ 4.3k
0
votes
3
replies
1.5k
views
strange ChIPpeakAnno and rtracklayer interaction.
GO annotate rtracklayer ChIPpeakAnno GO annotate rtracklayer ChIPpeakAnno
updated 15.3 years ago by ★ 11k • written 15.3 years ago by ▴ 20
0
votes
0
replies
1.3k
views
ChIPpeakAnno bug?
GO AnnotationData ChIPpeakAnno GO AnnotationData ChIPpeakAnno
15.3 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
1.3k
views
Error while ChIPpeakAnno installation
limma biomaRt IRanges ChIPpeakAnno limma biomaRt IRanges ChIPpeakAnno
updated 15.3 years ago by ★ 4.3k • written 15.3 years ago by ▴ 260
0
votes
0
replies
1.2k
views
ChIPpeakAnno -findOverlappingPeaks
ChIPSeq chipseq ChIPpeakAnno ChIPSeq chipseq ChIPpeakAnno
15.4 years ago Julie Zhu ★ 4.3k
0
votes
4
replies
1.8k
views
about ChIPpeakAnno
Annotation ChIPpeakAnno Annotation ChIPpeakAnno
15.4 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.6k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq chipseq ChIPpeakAnno ChIPSeq chipseq ChIPpeakAnno
15.4 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
1.3k
views
ChIPpeakAnno - VennDiagram P-value - NaN
ChIPSeq chipseq ChIPpeakAnno ChIPSeq chipseq ChIPpeakAnno
15.5 years ago Julie Zhu ★ 4.3k
0
votes
1
reply
2.3k
views
Question on Hypergeometric P value generated from makeVennDiagram in ChIPpeakAnno
Transcription GO ChIPpeakAnno Transcription GO ChIPpeakAnno
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ▴ 410
0
votes
6
replies
2.2k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr
updated 15.7 years ago by ★ 4.3k • written 15.7 years ago by ▴ 410
0
votes
8
replies
2.3k
views
ChIPpeakAnno Strandedness and distance calculation
Annotation Cancer ChIPpeakAnno Annotation Cancer ChIPpeakAnno
updated 15.7 years ago by ★ 1.6k • written 15.7 years ago by ★ 4.3k
0
votes
1
reply
985
views
ChIPpeakAnno BED2RangedData
ChIPpeakAnno ChIPpeakAnno
updated 15.8 years ago by ★ 4.3k • written 15.8 years ago by ▴ 10
0
votes
0
replies
1.1k
views
[Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data
Biostrings ChIPpeakAnno Biostrings ChIPpeakAnno
15.9 years ago Julie Zhu ★ 4.3k
0
votes
2
replies
1.2k
views
ChIPpeakAnno get sequences from ranged data
ChIPpeakAnno ChIPpeakAnno
15.9 years ago Julie Zhu ★ 4.3k
0
votes
7
replies
2.0k
views
[Bioc-sig-seq] ChIPpeakAnno annotatePeakInBatch function
Annotation GO BSgenome BSgenome ChIPpeakAnno Annotation GO BSgenome BSgenome ChIPpeakAnno
updated 15.9 years ago by ▴ 310 • written 15.9 years ago by ★ 4.3k
0
votes
3
replies
1.5k
views
ChIPpeakAnno
Transcription ChIPpeakAnno Transcription ChIPpeakAnno
16.0 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
974
views
[Bioc-devel] BSgenome error
GO BSgenome BSgenome IRanges ChIPpeakAnno GO BSgenome BSgenome IRanges ChIPpeakAnno
16.2 years ago Tony Chiang ▴ 570
0
votes
0
replies
1.4k
views
ChIPpeakAnno Biomart Archive annotation querying
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
16.2 years ago Khademul Islam ▴ 30
0
votes
1
reply
1.9k
views
ChIPpeakAnno Biomart annotation
Annotation GO AnnotationData BSgenome biomaRt BSgenome ChIPpeakAnno Annotation GO biomaRt
updated 16.2 years ago by ★ 4.3k • written 16.2 years ago by ▴ 30
179 results • Page 4 of 4
Recent ...
Replies
Comment: NUPOP usage by Tikaaaq2c • 0
To use the NuPoP application for nucleosome positioning prediction, you first need to provide a DNA sequence in FASTA format. If you are us…
Comment: Chip Seq Analysis of RNA Polymerase 2 by Tikaaaq2c • 0
Without proper scaling or an enrichment check , Pol 2 peaks can appear flat against the background. If the data remains noisy, you might w…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by Tikaaaq2c • 0
Organizing complex transcripts requires the same discipline as managing a digital library on a learning platform. Many researchers use a [S…
Comment: soGGi error by shepherl 4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Awards • All
Popular Question to Steve Lianoglou ★ 13k
Teacher to Michael Love 43k
Supporter to fl ▴ 20
Popular Question to James W. MacDonald 68k
Popular Question to rcavalca ▴ 140
Locations • All
The city by the bay, just now
Vietnam, 1 hour ago
Pakistan, 1 hour ago
Poland, 1 hour ago
United States, 1 hour ago
Traffic: 1568 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6