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Cydar
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cydar: negative values for cell assignment indices
cydar
6.8 years ago
Lukas Weber
• 0
2
votes
4
replies
929
views
Cydar's countCells tolerance parameter for arcsinh-transformed data
cydar
CyTOF
updated 5.2 years ago by
Aaron Lun
★ 28k • written 5.2 years ago by
mikhael.manurung
▴ 270
2
votes
8
replies
1.5k
views
Cydar normalizeBatch specifying batches
Cydar
normalization
normalizeBatch
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
Florent
▴ 10
0
votes
4
replies
1.1k
views
Using output from normalizeBatch() outside of cydar package
cydar
mass cytometry
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
kenneth.baker
• 0
1
vote
6
replies
1.6k
views
Re: Cydar. Can I Normalize CyTOF data with just one FCS file/batch and if so, which normalization mode is recommended?
Cydar
CyTOF
normalization
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
ghogg
• 0
0
votes
1
reply
561
views
Comparison of cydar to other Bioconductor packages for flow cytometry analysis
cydar
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
thkapell
▴ 10
6 results • Page
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
Comment: maSigPro genes from clusters
by
anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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