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DEAnalysis
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2
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4
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1.8k
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Use of limma R package with targeted proteomics for DE analysis
DEanalysis
limma
olinktargetedproteomics
12 months ago
svlachavas
▴ 840
3
votes
3
replies
3.9k
views
Differential expression analysis with only FPKM matrix available from total newbie in R
FPKM
RNASeqData
DEAnalysis
limma
2.5 years ago • updated 2.4 years ago
Ethan Nguyen
• 0
2
votes
10
replies
2.3k
views
How to get DE relative to a fold-change threshold in single factor experiments
edgeR
deanalysis
test fisher exact
updated 8.0 years ago by
Aaron Lun
★ 29k • written 8.0 years ago by
thkapell
▴ 10
0
votes
0
replies
1.8k
views
Specific considerations in RNA-Seq DE analysis with edgeR pipeline for a TCGA dataset starting with HTSeq counts
edgeR
rnaseq
DEanalysis
TCGA
independent filtering
8.3 years ago
svlachavas
▴ 840
4 results • Page
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
by
A.Barden
▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions
by
Gordon Smyth
53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack
by
a2a2hd42aa
• 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
by
strawberry3
• 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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