Biostar FPKM

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votes

101

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dge fpkm rna-seq

updated 9 weeks ago by Kevin Blighe 3.2k • written 9 weeks ago by lkianmehr • 0

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250

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RUVSeq FPKM removeBatchEffect RNA-seq sva

4 months ago Xiaojie Cheng • 0

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272

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tximport rsem transcript abundance TPM FPKM

updated 9 months ago by Michael Love 33k • written 10 months ago by m.metsger • 0

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3.5k

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counts fpkm fpkm() normalization deseq2

updated 2.4 years ago by Ahmed Alhendi • 0 • written 2.6 years ago by chiara.facciotto • 0

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1.6k

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edgeR pvalue qvalue fpkm differential gene expression

updated 2.8 years ago by Steve Lianoglou 13k • written 2.8 years ago by Harrisonesmith • 0

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485

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deseq2 edger fpkm counts fc

updated 2.9 years ago by Gordon Smyth 43k • written 2.9 years ago by ZihaoXing • 0

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435

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deseq2 edger fpkm counts TCGA

updated 2.9 years ago by Gordon Smyth 43k • written 2.9 years ago by ZihaoXing • 0

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625

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GenomicFeatures TPM FPKM lncRNA

3.2 years ago Ina Hoeschele ▴ 610

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2.7k

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FPKM

3.8 years ago Nithisha ▴ 10

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1.7k

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deseq2 fpkm

updated 22 days ago by Michael Love 33k • written 4.0 years ago by rhart • 0

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642

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r fpkm bioinformatics

updated 4.8 years ago by Aaron Lun ★ 27k • written 4.8 years ago by fromhj304 ▴ 10

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1.4k

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edgeR logFC FPKM

updated 4.8 years ago by Gordon Smyth 43k • written 4.8 years ago by Sara • 0

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4.1k

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limma voom voom rsem fpkm

4.9 years ago komal.rathi ▴ 80

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1.2k

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deseq2 cummerbund rlog fpkm clustering

5.5 years ago Jon Bråte ▴ 180

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2.8k

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deseq2 fpkm

updated 6.0 years ago by Michael Love 33k • written 6.0 years ago by ashley.doane ▴ 20

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1.5k

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count rnaseq rpkm fpkm edgeR

updated 6.3 years ago by Gordon Smyth 43k • written 6.3 years ago by thibault.lorin ▴ 10

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Comment: Paired samples analysis by Hanan • 0

Thank you BioStars referred me to this [tutorial][1] . [1]: http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DES…

Comment: cant read celfiles using oligo package by scipio04 • 0

i want to get a matrix in order to do population genomic analysis after it's about SNP the answer i received was about the right packa…

Comment: Bootstrap value using ape package and including it in phylogenetic tree by Kevin Blighe 3.2k

Hi, can you please elaborate further on what is the problem by showing a screenshot? Can you please also check the contents of your objects…

Answer: extracting the KEGG pathway for a set of genes by Kevin Blighe 3.2k

Hi Bogdan, I use *KEGGprofile*, but there are other options. The main function is `find_enriched_pathway()`, and it by default accepts…

Answer: cant read celfiles using oligo package by Kevin Blighe 3.2k

Hi, It seems that you already received an answer here: https://support.bioconductor.org/p/9138838/#9138849 What do you want to do wit…

Votes

Answer: Is there anyway to replace seqlevels in a txdb

Comment: Compilation fatal error: iostream.h: No such file or directory when installing R

Answer: tximeta countsFromAbundance for downstream analysis

A: plotPCA - how to add labels to a PCA plot

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