Biostar FPKM

Showing : FPKM • reset

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675

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RUVSeq FPKM removeBatchEffect RNA-seq sva

updated 5 days ago by ATpoint ▴ 970 • written 10 months ago by Xiaojie Cheng • 0

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645

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DESEQ2 fpkm rpkm tpm

3 months ago Sandhiya • 0

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243

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dge fpkm rna-seq

updated 7 months ago by Kevin Blighe 3.4k • written 7 months ago by lkianmehr • 0

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383

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tximport rsem transcript abundance TPM FPKM

updated 14 months ago by Michael Love 35k • written 16 months ago by m.metsger • 0

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4.3k

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counts fpkm fpkm() normalization deseq2

updated 2.8 years ago by Ahmed Alhendi • 0 • written 3.1 years ago by chiara.facciotto • 0

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2.1k

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edgeR pvalue qvalue fpkm differential gene expression

updated 3.2 years ago by Steve Lianoglou 13k • written 3.2 years ago by Harrisonesmith • 0

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648

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deseq2 edger fpkm counts fc

updated 3.3 years ago by Gordon Smyth 44k • written 3.3 years ago by ZihaoXing • 0

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515

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deseq2 edger fpkm counts TCGA

updated 3.3 years ago by Gordon Smyth 44k • written 3.3 years ago by ZihaoXing • 0

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741

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GenomicFeatures TPM FPKM lncRNA

3.6 years ago Ina Hoeschele ▴ 610

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3.2k

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FPKM

4.2 years ago Nithisha ▴ 10

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1.9k

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deseq2 fpkm

updated 6 months ago by Michael Love 35k • written 4.5 years ago by rhart • 0

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711

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r fpkm bioinformatics

updated 5.3 years ago by Aaron Lun ★ 27k • written 5.3 years ago by fromhj304 ▴ 10

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1.6k

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edgeR logFC FPKM

updated 5.3 years ago by Gordon Smyth 44k • written 5.3 years ago by Sara • 0

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4.4k

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limma voom voom rsem fpkm

5.4 years ago komal.rathi ▴ 80

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1.3k

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deseq2 cummerbund rlog fpkm clustering

6.0 years ago Jon Bråte ▴ 180

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3.0k

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deseq2 fpkm

updated 6.5 years ago by Michael Love 35k • written 6.5 years ago by ashley.doane ▴ 20

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1.6k

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count rnaseq rpkm fpkm edgeR

updated 6.8 years ago by Gordon Smyth 44k • written 6.8 years ago by thibault.lorin ▴ 10

17 results • Page 1 of 1

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Comment: DiffBind: Values of Called1 and Called2 do not appear to coincide with input pea by Rory Stark ★ 4.3k

Nothing too unusual, just a bug where in certain conditions the `Called` columns were being computed using the unmerged datasets. This onl…

Answer: Unusal standard deviation after rlog transformation and the homoscedasticity of by Michael Love 35k

I'm guessing this data does not conform well to the assumptions of the rlog, which are that variation is distributed a certain way from exp…

Answer: Affymetrix chip which is not listed on this webpage by James W. MacDonald 58k

You can't use the `affy` package for Clariom S arrays, but instead have to use the `oligo` package. I don't believe `affylmGUI` uses `oligo…

Comment: deseq2 + filtering low counts with noiseq function by Michael Love 35k

Nothing especially concerning about nonparametric methods in my opinion, except that with very low sample size they lose sensitivity. E.g. …

Comment: Using DiffBind blacklists and greylists with results mapped to BDGP6 by Rory Stark ★ 4.3k

I've checked in a fix that should handle this warning condition, it is active in the currently downloadable version if you do a `BiocManage…

Votes

edgeR cpm() function with and without log2

A: edgeR cpm() function with and without log2

A: How to get all possible comparisons in DiffBind

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