Bioconductor DEanalysis

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DEanalysis limma olinktargetedproteomics

4 weeks ago • updated 20 days ago svlachavas ▴ 840

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FPKM RNASeqData DEAnalysis limma

18 months ago Ethan Nguyen • 0

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edgeR deanalysis test fisher exact

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by thkapell ▴ 10

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edgeR rnaseq DEanalysis TCGA independent filtering

7.3 years ago svlachavas ▴ 840

4 results • Page 1 of 1

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Comment: Ensembl site unresponsive via biomaRt by Mike Smith ★ 6.6k

I think this is an unrelated issue. The original post includes the message `Error: 'curl_parse_url' is not an exported object from 'namesp…

Comment: pairedGSEA input files by shdam ▴ 10

Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …

Comment: Unused arguments error without used arguments in GSVA? by michaelarringtony • 0

Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/

Comment: EdgeR Biological CVs by jeffreestary • 0

By default, edgeR uses an empirical Bayes approach to shrink gene-wise dispersions toward a trended or [PolyTrack][1] common value, which i…

Comment: How to reverse complement some elements of a DNAStringSet by shrill.asp.tufl • 0

Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …

Votes

Comment: Limma comparing gene expression between base line and one treatment

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

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