Showing : DES • reset
2
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9
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Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 2 days ago by 65k • written 3 days ago by • 0
2
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2
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213
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With DESeq2 "Not full rank" Error with design
DESeq2 DEs
6 weeks ago feather-W • 0
0
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1
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609
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Matrix not full rank (time-series experiment with one group and covariates )
DESeq2 DES
updated 3.3 years ago by 41k • written 3.3 years ago by ▴ 10
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1
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501
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Design structure
DESeq2 des
updated 17 months ago by 41k • written 17 months ago by • 0
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1
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557
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Design Matrix Singularity Error
DES DESIGN
updated 19 months ago by 41k • written 19 months ago by • 0
0
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1
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121
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Bioinformatics student
Des DESeq2
updated 15 days ago by • 0 • written 15 days ago by • 0
6 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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Popular Question to Leo Lahti ▴ 40
Scholar to James W. MacDonald 65k
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