Bioconductor DES

Showing : DES • reset

votes

replies

338

views

DESeq2 RUVSeq RUVseq BatchEffect DES

updated 6 days ago by James W. MacDonald 65k • written 6 days ago by Alexandre • 0

votes

129

views

Des DESeq2

updated 19 days ago by hemantcnaik • 0 • written 19 days ago by Sahar • 0

votes

replies

218

views

DESeq2 DEs

6 weeks ago feather-W • 0

votes

503

views

DESeq2 des

updated 17 months ago by Michael Love 41k • written 18 months ago by Devin • 0

votes

564

views

DES DESIGN

updated 19 months ago by Michael Love 41k • written 19 months ago by mike • 0

votes

612

views

DESeq2 DES

updated 3.4 years ago by Michael Love 41k • written 3.4 years ago by heikki.sarin ▴ 10

6 results • Page 1 of 1

Recent ...

Replies

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…

Comment: Differences in differential analysis methods for RNA-Seq by james.zhang20 • 0

Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…

Comment: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k

There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …

Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k

MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Votes

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Awards • All