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DESeq
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0
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889
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get full variance per gene from DESeq
DESeq
DESeq
15.3 years ago
Graham Thomas
▴ 20
0
votes
1
reply
1.7k
views
DESeq question correlation
DESeq
DESeq
updated 15.3 years ago by
Naomi Altman
★ 6.0k • written 15.3 years ago by
Pete Shepard
▴ 240
0
votes
0
replies
1.2k
views
A question on baySeq
Normalization
DEGseq
DESeq
Normalization
DEGseq
DESeq
15.3 years ago
sunghee OH
▴ 50
0
votes
1
reply
1.3k
views
A question on DESeq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 15.3 years ago by
Simon Anders
★ 3.8k • written 15.3 years ago by
sunghee OH
▴ 50
0
votes
1
reply
1.5k
views
Problem for install DESeq
DESeq
DESeq
updated 15.3 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.3 years ago by
Jinyan Huang
▴ 190
0
votes
2
replies
1.2k
views
error in nbinomTest from package DESeq
DESeq
DESeq
15.4 years ago
Andreia Fonseca
▴ 810
0
votes
1
reply
993
views
error in nbinomTest from package DESeq
DESeq
DESeq
updated 15.4 years ago by
Wolfgang Huber
★ 13k • written 15.4 years ago by
Andreia Fonseca
▴ 810
0
votes
13
replies
4.3k
views
DESeq and number of replicates required for RNA-Seq
GO
DESeq
GO
DESeq
updated 15.4 years ago by
Naomi Altman
★ 6.0k • written 15.4 years ago by
michael watson IAH-C
★ 3.4k
0
votes
8
replies
2.9k
views
Experimental design for RNA-Seq
edgeR
DEGseq
DESeq
edgeR
DEGseq
DESeq
updated 15.5 years ago by
Naomi Altman
★ 6.0k • written 15.5 years ago by
michael watson IAH-C
★ 3.4k
0
votes
1
reply
1.4k
views
analysis of differential expression of small RNAs sequences
RNASeq
DESeq
RNASeq
DESeq
updated 15.6 years ago by
Simon Anders
★ 3.8k • written 15.6 years ago by
Andreia Fonseca
▴ 810
0
votes
0
replies
1.3k
views
RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq
DESeq
RNASeq
DESeq
15.6 years ago
Simon Anders
★ 3.8k
0
votes
0
replies
1.2k
views
RNAseq expression analysis using DESeq: technical replicates, paired samples
RNASeq
DESeq
RNASeq
DESeq
15.6 years ago
Jinfeng Liu
▴ 10
512 results • Page
11 of 11
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much, @ATpoint and @kevin , for your valuable insights. I have carefully checked all your suggestions. First, I examined th…
Answer: Finding duplicated entries in GRangesList
by
Kevin Blighe
★ 4.0k
The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…
Answer: DESeq2 on non-RNASeq counts data
by
Kevin Blighe
★ 4.0k
The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hello Rui Tang, The buffer overflow error in featureCounts that you encountered is likely due to a compatibility issue between the Subre…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
The issue that you describe with the tumor mutational burden (TMB) plots appearing linear and lacking consistent TMB values across samples …
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
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