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DeSeq2
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6
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 6 days ago by
swbarnes2
★ 1.4k • written 7 days ago by
arfranco
▴ 130
2
votes
5
replies
138
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
1 day ago • updated 2 hours ago
sajadahmad41454
• 0
2
votes
3
replies
203
views
Too many significant genes when integrating gtex and tcga
RNA-seq
DESeq2
updated 4 days ago by
ATpoint
★ 4.1k • written 6 days ago by
Reza
• 0
1
vote
3
replies
257
views
Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 1 day ago by
ATpoint
★ 4.1k • written 8 days ago by
angelathuynh5
• 0
0
votes
2
replies
142
views
Timecourse RNASeq analysis
DESeq2
ImpulseDE2
timecour
timecoursedata
moanin
9 days ago • updated 6 days ago
Aurora
• 0
1
vote
1
reply
137
views
Handling multiple differential expression comparisons
DESeq2
updated 4 days ago by
Michael Love
42k • written 6 days ago by
Zainab
▴ 10
0
votes
1
reply
42
views
normalization using Deseq2
DESeq2
rnaseqGene
Normalization
updated 21 hours ago by
ATpoint
★ 4.1k • written 21 hours ago by
sajadahmad41454
• 0
7 results • Page
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Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Dylan.Sheerin
• 0
Thank you very much, Gordon. I'll give voomLmFit a go!
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
by
Gordon Smyth
50k
Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…
Comment: Log-cpm values from limma
by
Gordon Smyth
50k
No, it does not mean that. `voom()` uses the design matrix with the W covariates, to compute precision weights but not to adjust the log-cp…
Votes
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
Answer: Extremely small p-values using Limma for proteomic data
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