Bioconductor DeSeq2

Showing : DeSeq2 • reset

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1.4k

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DESeq2 SpikeIn Normalization

updated 6 hours ago by maria.soler • 0 • written 15 months ago by kalavattam ▴ 10

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258

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DESeq2

updated 2 days ago by ATpoint ★ 4.1k • written 8 days ago by angelathuynh5 • 0

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244

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DESeq2 design coldata

updated 6 days ago by swbarnes2 ★ 1.4k • written 7 days ago by arfranco ▴ 130

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206

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RNA-seq DESeq2

updated 5 days ago by ATpoint ★ 4.1k • written 6 days ago by Reza • 0

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167

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DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation

2 days ago • updated 13 hours ago sajadahmad41454 • 0

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141

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DESeq2

updated 5 days ago by Michael Love 42k • written 6 days ago by Zainab ▴ 10

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DESeq2 rnaseqGene Normalization

updated 1 day ago by ATpoint ★ 4.1k • written 1 day ago by sajadahmad41454 • 0

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DESeq2 DifferentialExpression

updated 8 hours ago by ATpoint ★ 4.1k • written 8 hours ago by sajadahmad41454 • 0

8 results • Page 1 of 1

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Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>

Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…

Answer: Differential gene expression analysis results by ATpoint ★ 4.1k

Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…

Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.