Showing : ENmix • reset
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Help with ENmix readidat
ENmix IlluminaHumanMethylationEPICmanifest
updated 9 hours ago by 66k • written 2.0 years ago by • 0
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can ENmix::oxBS.MLE be run on comBat-adjusted data?
ENmix comBat
3.1 years ago joannew • 0
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18
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2.6k
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problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.2 years ago by • 0
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567
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ENmix: how to combine oxBS.MLE with RCP?
ENmix
3.2 years ago joannew • 0
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1
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858
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could not find function "ComBat.mc"
ENmix
updated 3.5 years ago by 3.9k • written 3.5 years ago by ▴ 10
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604
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Error in peak calling with Combp
ENmix
3.6 years ago mwjnorris ▴ 10
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654
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Error for ENmix::bmiq.mc() on one sample
ENmix
5.2 years ago moldach ▴ 20
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Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation ENmix BMIQ wateRmelon
5.3 years ago • updated 5.2 years ago moldach ▴ 20
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1.0k
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how to install ENmix github master branch on Ubuntu machine?
ENmix
written 7.8 years ago by ▴ 10
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4
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1.9k
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ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
7.9 years ago DSP • 0
10 results • Page 1 of 1
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Replies
Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
Votes
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
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