Showing : combat sva • reset
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SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA combat sva leek
updated 2.3 years ago by • 0 • written 6.4 years ago by ▴ 10
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729
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
5.0 years ago jmsendoya • 0
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624
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Help with multiple batch effects
combat sva batch effect
5.2 years ago Fp • 0
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523
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Number of SVA increased after ComBat
combat sva
5.5 years ago jonellevillar • 0
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1
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902
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Combat prior plots good enough?
combat combat sva
6.0 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
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1.1k
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removing batch effects using sva combat and linear regression
combat sva microarry Jeff leek
6.2 years ago DataFanatic ▴ 10
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806
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SVA: Reference manual improvment
combat sva sva
6.4 years ago alice.anlind • 0
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1.1k
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What is the input for Combat in R?
combat sva input files
6.5 years ago arisarkar88 ▴ 40
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1.0k
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RPKM counts with SVA package & Combat with SVA?
batch effect combat sva sva
6.5 years ago Ahdee ▴ 50
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2
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783
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Problem with Combat batch adjustment
combat sva
6.8 years ago vinnu260 ▴ 10
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2
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1.3k
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is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva batch effect comba
updated 6.9 years ago by ▴ 110 • written 6.9 years ago by ▴ 10
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6
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1.8k
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is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 6.9 years ago by ▴ 50 • written 6.9 years ago by ▴ 10
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759
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SVA) Error while using 'sva' package - combat
combat sva
7.1 years ago kkwon • 0
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1
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1.5k
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Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 7.1 years ago by ▴ 640 • written 7.1 years ago by ▴ 810
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2
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1.1k
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Batch effect problem using SVA showing problems
SVA combat sva batch effect
updated 7.1 years ago by ▴ 640 • written 7.1 years ago by ▴ 10
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4
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1.5k
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ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
7.2 years ago DSP • 0
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927
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SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
7.4 years ago John Townsend ▴ 20
7
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3
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2.9k
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SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 7.4 years ago by ▴ 840 • written 7.4 years ago by ▴ 20
1
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2
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2.3k
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cross platform normalization in R
R Combat SVA
updated 7.7 years ago by 13k • written 7.7 years ago by • 0
19 results • Page 1 of 1
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Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…
Comment: DelayedArray::read_sparse_block by Koki ▴ 10
Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …
Comment: DelayedArray::read_sparse_block by Koki ▴ 10
Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…
Comment: DMRcate design by James W. MacDonald 63k
That's what identical context means.
Votes
Answer: What MetaPhlAn3 database was used in cMD 3?
Comment: Speeding up of DelayedArray::write_block()
Answer: DelayedArray::read_sparse_block
Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
Comment: Timely differentially expressed genes
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