Bioconductor ENmix

Showing : ENmix • reset

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604

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ENmix

3.6 years ago mwjnorris ▴ 10

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1.0k

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ENmix

written 7.8 years ago by avilella ▴ 10

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654

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ENmix

5.2 years ago moldach ▴ 20

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858

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ENmix

updated 3.5 years ago by shepherl 3.9k • written 3.5 years ago by ycding ▴ 10

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567

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ENmix

3.2 years ago joannew • 0

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2.6k

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ENmix Bioconductor rtracklayer

written 3.2 years ago by lea • 0

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709

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ENmix comBat

3.1 years ago joannew • 0

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1.1k

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methylation ENmix BMIQ wateRmelon

5.3 years ago • updated 5.2 years ago moldach ▴ 20

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730

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ENmix IlluminaHumanMethylationEPICmanifest

updated 8 hours ago by James W. MacDonald 66k • written 2.0 years ago by Daphna • 0

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1.9k

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ENmix combat.mc illumina450k combat sva

7.9 years ago DSP • 0

10 results • Page 1 of 1

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

Votes

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

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