Bioconductor EdgeR

Showing : EdgeR • reset

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122

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design glm edgeR

updated 3 days ago by Gordon Smyth 50k • written 4 days ago by Guillermo • 0

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246

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DifferentialExpression TimeCourse timeOmics edgeR RNAseq

updated 4 days ago by Gordon Smyth 50k • written 5 days ago by Ashley • 0

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178

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RNASeqData edgeR

updated 16 days ago by Gordon Smyth 50k • written 16 days ago by z_bahari • 0

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627

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fgsea edgeR

16 days ago • updated 12 days ago gene_bioconductor ▴ 10

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204

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edgeR

written 25 days ago by k___ ▴ 30

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472

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edgeR

4 weeks ago • updated 26 days ago Jonathan ▴ 10

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312

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limma edgeR RNASeq

updated 9 days ago by Gordon Smyth 50k • written 4 weeks ago by Shaimaa Gamal • 0

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368

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rna-seq edgeR

updated 28 days ago by Gordon Smyth 50k • written 5 weeks ago by Netanel • 0

8 results • Page 1 of 1

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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k

Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…

Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k

Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…

Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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