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Ensembl VEP
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questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
4.9 years ago
ycchang
• 0
1 result • Page
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Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
I think Guido already answered this question.
Answer: biomaRt has encountered an unknown server error while using getLDS
by
miriam.lloriansopena
• 0
This has worked very well for me. Thank you for your help!!
Answer: biomaRt has encountered an unknown server error while using getLDS
by
Mike Smith
★ 6.5k
There's a lot to unpack here! First, unfortunatley the getLDS funciontallity started failing with the release of BioMart 106. I've aske…
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
Well, I was looking at the result table (enrich18k@result, or yy@result in your example), and it gives every pathway even the non-significa…
Comment: Trouble reading samplesheet in with diffbind to create dba
by
Mallory
• 0
Thank you for your reply! There mustve been something wierd going on with my peak formats as you pointed out. I recalled all the peaks and …
Votes
Answer: R: Confused about Limma R package output being LogFC or Log2FC
Answer: biomaRt has encountered an unknown server error while using getLDS
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
A: dream vignette says limma-voom repeated measures two-group comparison needs two
Answer: Get the latest gene name from Entrez ID
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