Bioconductor Gene annotation

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biomaRt gene annotation

updated 3.7 years ago by James W. MacDonald 64k • written 3.7 years ago by jnaviapelaez ▴ 10

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922

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R ensemblVEP gene annotation Variant Effect Predictor Ensembl VEP

4.4 years ago ycchang • 0

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1.2k

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recount RNAseq gencode lncRNA gene annotation

updated 4.6 years ago by chris.wilks ▴ 70 • written 4.7 years ago by francesco.gandolfi ▴ 20

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3.4k

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edger DGEList org.hs.eg.db gene annotation

updated 2.2 years ago by IIart.hubII • 0 • written 6.0 years ago by svlachavas ▴ 820

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1.2k

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gene ontology goslim enrichment analysis gene annotation

7.6 years ago mirko • 0

5 results • Page 1 of 1

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Comment: Normalised counts from RUVg in RUVSeq by Shaimaa Gamal • 0

Hello I was wondering if I should use ruv-corrected counts and ruv lib sizes to create a DGE object that can be used later for DE analysis …

Comment: enrichGOgradient color change by James W. MacDonald 64k

You could look at my answer and extrapolate from there.

Comment: enrichGOgradient color change by WU • 0

I would like to ask how to make the counts legend black. Thank you.

Answer: Problems with FLOWAI by Alexander • 0

Hi. The length of the file path, or whether the files are local on the computer has nothing to do with it in my experience. I watched the a…

Answer: Asses fit of variance prior by Gordon Smyth 49k

> is it advisable to asses the fit of the variance prior before running limma? No, neither necessary nor possible. If this sort of checki…

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Answer: enrichGOgradient color change

Answer: Filter genes by expression for voomLmFit

How to know if I should use voomWithQualityWeights() or not?

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Popular Question to Lluís Revilla Sancho ▴ 720

Scholar to Gordon Smyth 49k

Popular Question to Frederik Ziebell ▴ 20