Biostar Gene annotation

Showing : gene annotation • reset

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246

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biomaRt gene annotation

updated 2.4 years ago by James W. MacDonald 60k • written 2.4 years ago by jnaviapelaez ▴ 10

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503

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R ensemblVEP gene annotation Variant Effect Predictor Ensembl VEP

3.1 years ago ycchang • 0

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707

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recount RNAseq gencode lncRNA gene annotation

updated 3.3 years ago by chris.wilks ▴ 40 • written 3.4 years ago by francesco.gandolfi ▴ 20

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2.5k

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edger DGEList org.hs.eg.db gene annotation

updated 10 months ago by IIart.hubII • 0 • written 4.7 years ago by svlachavas ▴ 800

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882

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gene ontology goslim enrichment analysis gene annotation

6.3 years ago mirko • 0

5 results • Page 1 of 1

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Answer: spot- vs cell-level data access by Leonardo Collado Torres ▴ 980

Hi, The `SingleCellExperiment` object you can download with `fetch_data(type = "sce")` pre-dates the creation of `SpatialExperiment`. No…

Answer: unable to install.packages("spatialLIBD") by Leonardo Collado Torres ▴ 980

Hi @kstern, Thank you for your interest in `spatialLIBD`. You will still need the package in order to re-cast the object into a `Spatia…

Comment: Question regarding averaging DESeq2 results. by e.v.egeland • 0

Thanks for your quick reply, Wolfgang. Your answer does cover the essence of my question. I did initially apply both approaches discussed …

Comment: unable to install.packages("spatialLIBD") by shepherl 3.2k

I guess it depends on what you mean by only getting the datasets? You can clone the package with `git clone https://git.bioconductor.org/p…

Comment: Which is the best type of data for correlation or survival analysis by Yang Shi • 0

Thanks for your reply and your excellent package! Could you please tell me the **difference bwtween vst transformed data and the "vtd" base…

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C: No genes found in universe : goana error

A: No genes found in universe : goana error

No genes found in universe : goana error

Answer: Pathview unable to download pathways

Comment: Which is the best type of data for correlation or survival analysis

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