Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ensemblVEP
•
reset
0
votes
0
replies
605
views
RFC: significant changes to ensemblVEP package
VariantAnnotation
ensemblVEP
2.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
1
reply
809
views
Differential express genes in one group across all time points
DESeq2
edgeR
BP4RNAseq
ensemblVEP
updated 2.9 years ago by
Michael Love
43k • written 2.9 years ago by
DHARMESH
• 0
2
votes
3
replies
3.5k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity
ensemblVEP
docker
3.2 years ago
jtaylor-predicine
• 0
0
votes
1
reply
2.3k
views
Ensembl REST API Endpoints
ensemblVEP
EnsDb.Hsapiens.v79
updated 4.2 years ago by
Kevin Blighe
★ 4.0k • written 4.2 years ago by
anasjamshed1994
• 0
0
votes
2
replies
2.0k
views
News:
Ensembl 103 has been released
biomaRt
ensembldb
Ensembl
ensemblVEP
Biomart
5.1 years ago • updated 4.9 years ago
mchakiachvili
▴ 20
0
votes
2
replies
1.9k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R
ensemblVEP
gene annotation
Variant Effect Predictor
Ensembl VEP
6.6 years ago
ycchang
• 0
2
votes
3
replies
2.5k
views
Error in VCF parsing with VariantAnnotation
software error
VariantAnnotation
ensemblVEP
updated 7.0 years ago by
Valerie Obenchain
★ 6.8k • written 7.0 years ago by
mumichae
▴ 20
2
votes
5
replies
3.5k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error
ensemblVEP
updated 7.0 years ago by
Martin Morgan
25k • written 7.0 years ago by
patrick.turko
▴ 10
0
votes
4
replies
2.4k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 8.0 years ago by
shepherl
4.3k • written 8.0 years ago by
Janet Young
▴ 740
0
votes
0
replies
1.4k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
8.8 years ago
mlrubio
• 0
0
votes
0
replies
2.4k
views
problem using ensemblVEP with GRC37
ensemblvep
grch37
8.8 years ago
mikko.arvas
• 0
0
votes
1
reply
1.3k
views
ensemblVEP problem with MySQL database
ensemblvep
9.6 years ago
clairelsimpson
▴ 10
2
votes
4
replies
1.9k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 9.8 years ago by
Martin Morgan
25k • written 9.8 years ago by
kevin.rue
▴ 350
2
votes
3
replies
2.6k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 11.2 years ago by
Valerie Obenchain
★ 6.8k • written 11.2 years ago by
Moiz Bootwalla
▴ 50
0
votes
2
replies
3.6k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription
HapMap
PolyPhen
SIFT
convert
genomes
ensemblVEP
Transcription
HapMap
SIFT
updated 12.2 years ago by
Valerie Obenchain
★ 6.8k • written 12.2 years ago by
Thomas Sandmann
▴ 30
0
votes
0
replies
1.5k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer
MLInterfaces
bridge
ensemblVEP
AnnotationHub
Cancer
MLInterfaces
bridge
ensemblVEP
12.2 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.6k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation
Annotation
PolyPhen
SIFT
annotate
VariantAnnotation
ensemblVEP
Annotation
12.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
1.8k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP
ensemblVEP
updated 12.4 years ago by
Valerie Obenchain
★ 6.8k • written 12.4 years ago by
Guest User
★ 13k
0
votes
5
replies
2.9k
views
ensemblVEP: passing on coverage / frequency information
Coverage
VariantTools
ensemblVEP
Coverage
VariantTools
ensemblVEP
updated 12.9 years ago by
Valerie Obenchain
★ 6.8k • written 12.9 years ago by
Guest User
★ 13k
19 results • Page
1 of 1
Recent ...
Replies
Comment: Inclusion of non-coding portions of transcripts (UTR-regions and introns) within
by
Pat
• 0
Ill be honest, I didnt trust any of these services for a long time. Im a political science major and the pressure around writing is intense…
Comment: Question on processing compound protein groups in limpa
by
brianpeterson1210
• 0
Thank you[,][1] Appreciated! [1]: http://paint3d.org
Comment: Subsetting DDS object for individual conditions over time
by
A
▴ 60
Hi @atpoint Thank you for the quick reply! and this makes sense! I will confirm with a corr to see how the SFs differ but also how DE dif…
Answer: Subsetting DDS object for individual conditions over time
by
ATpoint
★ 5.0k
It would surprise my quite a bit if the size factors would differ notably between subset or not. I would always try to keep the size factor…
Comment: GSEA error
by
Adithi
• 0
Thank you so much. That makes perfect sense to me. I will work on this.
Votes
Answer: RNA Seq using Lrt
Answer: DESeq2 LRT Reduced Formula
Answer: DESeq2: LRT or WALD guidance
Answer: GSEA error
Answer: OrgDb for maize
Awards
• All
Popular Question
to
A
▴ 60
Popular Question
to
Aichatou
• 0
Popular Question
to
boczniak767
▴ 740
Popular Question
to
shepherl
4.3k
Popular Question
to
Gordon Smyth
53k
Locations
• All
Barcelona, Spain,
1 hour ago
Ireland,
1 hour ago
United States,
2 hours ago
Czechia,
2 hours ago
WEHI, Melbourne, Australia,
3 hours ago
Traffic: 1234 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6