Showing : ensemblVEP • reset
0
votes
0
replies
147
views
RFC: significant changes to ensemblVEP package
VariantAnnotation ensemblVEP
3 months ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
406
views
Differential express genes in one group across all time points
DESeq2 edgeR BP4RNAseq ensemblVEP
updated 12 months ago by 41k • written 12 months ago by • 0
2
votes
3
replies
1.5k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity ensemblVEP docker
16 months ago jtaylor-predicine • 0
0
votes
1
reply
774
views
Ensembl REST API Endpoints
ensemblVEP EnsDb.Hsapiens.v79
updated 2.3 years ago by ★ 3.9k • written 2.3 years ago by • 0
0
votes
2
replies
1.3k
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
3.2 years ago • updated 3.0 years ago mchakiachvili ▴ 20
0
votes
2
replies
1.1k
views
questions when installing 'Ensembl VEP' and R package 'ensemblVEP'
R ensemblVEP gene annotation Variant Effect Predictor Ensembl VEP
4.8 years ago ycchang • 0
2
votes
3
replies
1.4k
views
Error in VCF parsing with VariantAnnotation
software error VariantAnnotation ensemblVEP
updated 5.1 years ago by ★ 6.8k • written 5.1 years ago by ▴ 20
2
votes
5
replies
2.2k
views
ensemblVEP: "Ensembl VEP is not installed in your path."
software error ensemblVEP
updated 5.1 years ago by 25k • written 5.1 years ago by ▴ 10
0
votes
4
replies
1.2k
views
ensemblVEP supported versions, and troubleshooting
ensemblVEP
updated 6.1 years ago by 3.8k • written 6.1 years ago by ▴ 740
0
votes
0
replies
1.1k
views
error using ensemblVEP v88 when querying rs67418256 with basic(param_vep)$everything=TRUE
ensemblvep
6.9 years ago mlrubio • 0
0
votes
0
replies
1.7k
views
problem using ensemblVEP with GRC37
ensemblvep grch37
6.9 years ago mikko.arvas • 0
0
votes
1
reply
867
views
ensemblVEP problem with MySQL database
ensemblvep
7.7 years ago clairelsimpson ▴ 10
2
votes
4
replies
1.4k
views
parseCSQToGRanges() : mcols are all factors, despite some numeric fields
ensemblVEP
updated 7.9 years ago by 25k • written 7.9 years ago by ▴ 350
2
votes
3
replies
2.0k
views
ensemblVEP support for Ensembl API version 78
ensemblvep
updated 9.3 years ago by ★ 6.8k • written 9.3 years ago by ▴ 50
0
votes
2
replies
2.2k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Transcription HapMap PolyPhen SIFT convert genomes ensemblVEP Transcription HapMap SIFT
updated 10.3 years ago by ★ 6.8k • written 10.3 years ago by ▴ 30
0
votes
0
replies
1.1k
views
ensemblVEP, variant_effect_predictor versions and release schedule
Cancer MLInterfaces bridge ensemblVEP AnnotationHub Cancer MLInterfaces bridge ensemblVEP
10.3 years ago Valerie Obenchain ★ 6.8k
0
votes
0
replies
1.2k
views
zero-row result breaks select() on PolyPhen.Hsapiens.* and SIFT.Hsapiens.*
VariantAnnotation Annotation PolyPhen SIFT annotate VariantAnnotation ensemblVEP Annotation
10.4 years ago Valerie Obenchain ★ 6.8k
0
votes
5
replies
1.3k
views
ensemblVEP, variant_effect_predictor versions and release schedule
ensemblVEP ensemblVEP
updated 10.5 years ago by ★ 6.8k • written 10.5 years ago by ★ 13k
0
votes
5
replies
2.0k
views
ensemblVEP: passing on coverage / frequency information
Coverage VariantTools ensemblVEP Coverage VariantTools ensemblVEP
updated 11.0 years ago by ★ 6.8k • written 11.0 years ago by ★ 13k
19 results • Page 1 of 1
Recent ...
Replies
Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
Awards • All
Popular Question to paria.alipour • 0
Popular Question to Eman • 0
Popular Question to James W. MacDonald 65k
Scholar to nhaus ▴ 30
Popular Question to shepherl 3.8k
Locations • All
France, 1 minute ago
Italy, 3 minutes ago
Spain, 5 minutes ago
Egypt, 7 minutes ago
Singapore, 22 minutes ago
Traffic: 661 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6