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FC
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reset
3
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5
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5.9k
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How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
3.1 years ago
zhxiaokang
▴ 20
7
votes
6
replies
24k
views
Conversion of LogFC to FC
limma
logfc
fc
updated 4.6 years ago by
Gordon Smyth
51k • written 4.6 years ago by
nia
▴ 30
2
votes
4
replies
2.3k
views
why the logFC is different between edgeR,DESeq2 results and fpkm logFC(log2(FPKM_tumor_mean/FPKM_normal_mean)?
deseq2
edger
fpkm
counts
fc
updated 6.1 years ago by
Gordon Smyth
51k • written 6.1 years ago by
ZihaoXing
• 0
3 results • Page
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Replies
Answer: Deseq to output continous sequencing data
by
Michael Love
42k
This what VST is for? Have you see the `rnaseqGene` workflow?
Answer: Adjusted p-values become NA when sub-setting samples
by
Michael Love
42k
One thing to do is just turn off `independentFiltering` altogether. If you know what are reasonable filters that maintain power by discardi…
Comment: Adjusted p-values become NA when sub-setting samples
by
Michael Love
42k
Just saw this post, for some reason I didn't get it the first time.
Comment: RNA-seq: samples form different experiments, how to do DGEs?
by
Philippine
• 0
Thank you, indeed I called them lab but their name should be Batch 1, 2, 3, 4, 5 and 6. Thank you again for your help! :D
Comment: Adjusted p-values become NA when sub-setting samples
by
txema.heredia
• 0
I have been back to this after a break. I have run a series of pairwise comparisons using either all the samples together, or only a subset…
Votes
Answer: BiocParallel error when running DiffBind
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
Answer: Robust way of dealing with low number of samples for Differential Gene Expressio
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