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FoldChange
•
reset
1
vote
2
replies
938
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
14 months ago
Sabiha
▴ 20
1
vote
1
reply
4.8k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 19 months ago by
Rory Stark
★ 5.2k • written 19 months ago by
bhandary.8590
▴ 20
4
votes
4
replies
1.3k
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
20 months ago
bhandary.8590
▴ 20
0
votes
2
replies
2.0k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 2.9 years ago by
Michael Love
43k • written 2.9 years ago by
dadca596
• 0
0
votes
1
reply
1.1k
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 3.1 years ago by
Gordon Smyth
52k • written 3.1 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.5k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 3.1 years ago by
Michael Love
43k • written 3.1 years ago by
yampolsk
• 0
3
votes
5
replies
6.6k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
3.5 years ago
zhxiaokang
▴ 20
2
votes
9
replies
2.9k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 3.6 years ago by
swbarnes2
★ 1.4k • written 3.6 years ago by
najib
• 0
0
votes
7
replies
3.6k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 4.3 years ago by
Gordon Smyth
52k • written 4.3 years ago by
lessismore
▴ 20
4
votes
5
replies
1.7k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 5.0 years ago by
Gordon Smyth
52k • written 5.0 years ago by
Pietro
▴ 40
1
vote
1
reply
1.6k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.8 years ago by
Michael Love
43k • written 6.1 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.7k
views
Foldchange values Limma
limma
RNAseq
foldchange
6.0 years ago • updated 5.9 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
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Replies
Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
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Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
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68k
If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…
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4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
Votes
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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