Bioconductor FoldChange

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StatisticalMethod FoldChange edgeR RNASeq

4 months ago Sabiha ▴ 20

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2.2k

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FoldChange DiffBind lfcShrink

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by bhandary.8590 ▴ 20

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796

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FoldChange DiffBind lfcShrink Cut&TagData

10 months ago bhandary.8590 ▴ 20

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1.6k

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DESeq2 TPM Foldchange

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by dadca596 • 0

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887

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edgeR RNA-Seq log2 foldchange q_value

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by johndavidgriner74 • 0

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1.1k

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sign FoldChange DESeq2 reference

updated 2.3 years ago by Michael Love 41k • written 2.3 years ago by yampolsk • 0

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4.7k

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DifferentialExpression DEA FC FoldChange edgeR

2.6 years ago zhxiaokang ▴ 20

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2.3k

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EdgeR RNAseq Foldchange

updated 2.8 years ago by swbarnes2 ★ 1.3k • written 2.8 years ago by najib • 0

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2.3k

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foldchange topGO DifferentialExpression enrichment

updated 3.5 years ago by Gordon Smyth 50k • written 3.5 years ago by lessismore ▴ 20

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1.4k

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limma microarray foldchange DEG GEO

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by Pietro ▴ 40

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1.4k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

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1.4k

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limma RNAseq foldchange

5.2 years ago • updated 5.1 years ago susana.amaral.teixeira ▴ 20

12 results • Page 1 of 1

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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40

1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …

Answer: PCA plot suggestions by Michael Love 41k

For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

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Answer: Dominance Index for Shotgun Metagenomics Data

Answer: Math expression in shapeCustom legend in EnhancedVolcano

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

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