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FoldChange
•
reset
1
vote
2
replies
593
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
7 months ago
Sabiha
▴ 20
1
vote
1
reply
3.0k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 12 months ago by
Rory Stark
★ 5.2k • written 12 months ago by
bhandary.8590
▴ 20
4
votes
4
replies
982
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
13 months ago
bhandary.8590
▴ 20
0
votes
2
replies
1.7k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 2.3 years ago by
Michael Love
42k • written 2.3 years ago by
dadca596
• 0
0
votes
1
reply
973
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.5 years ago by
Gordon Smyth
51k • written 2.5 years ago by
johndavidgriner74
• 0
0
votes
2
replies
1.2k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 2.6 years ago by
Michael Love
42k • written 2.6 years ago by
yampolsk
• 0
3
votes
5
replies
5.3k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
2.9 years ago
zhxiaokang
▴ 20
2
votes
9
replies
2.5k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 3.1 years ago by
swbarnes2
★ 1.4k • written 3.1 years ago by
najib
• 0
0
votes
7
replies
2.6k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 3.7 years ago by
Gordon Smyth
51k • written 3.7 years ago by
lessismore
▴ 20
4
votes
5
replies
1.5k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 4.5 years ago by
Gordon Smyth
51k • written 4.5 years ago by
Pietro
▴ 40
1
vote
1
reply
1.4k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.3 years ago by
Michael Love
42k • written 5.5 years ago by
fiona.dick91
▴ 60
5
votes
4
replies
1.5k
views
Foldchange values Limma
limma
RNAseq
foldchange
5.4 years ago
susana.amaral.teixeira
▴ 20
12 results • Page
1 of 1
Recent ...
Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
▴ 730
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to
maltethodberg
▴ 180
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to
Michael Love
42k
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to
Leonardo Collado Torres
★ 1.1k
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to
Gordon Smyth
51k
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