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Venndiagram files text

23 months ago ratto • 0

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files gzip

4.9 years ago psschlogl • 0

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Files TXT

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by ekl • 0

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merge files R packages gene annotations

5.3 years ago mohammedtoufiq91 ▴ 10

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deseq2 tximport file.path files file.exists

5.8 years ago Leo K • 0

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merge rnaseq files

updated 8.2 years ago by jayme.rickman • 0 • written 8.2 years ago by BioinfGuru ▴ 70

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Answer: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

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A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k