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Online Venn diagram generator where I can paste text files containing gene name lists to get the diagram
Venndiagram
files
text
2.9 years ago
ratto
• 0
1
vote
2
replies
1.3k
views
Working with compressed fasta files?
files
gzip
5.9 years ago
psschlogl
• 0
0
votes
1
reply
1.1k
views
MEV and TXT files
Files
TXT
updated 6.1 years ago by
Gordon Smyth
53k • written 6.1 years ago by
ekl
• 0
1
vote
4
replies
2.5k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
6.3 years ago
mohammedtoufiq91
▴ 10
3
votes
9
replies
6.3k
views
txi <- tximport(files, type="salmon", tx2gene=tx2gene) Error in tximport(files, type = "salmon", tx2gene = tx2gene) : all(file.exists(files)) is n…
deseq2
tximport
file.path
files
file.exists
6.8 years ago
Leo K
• 0
0
votes
1
reply
2.7k
views
Merging files with gene expression data
merge
rnaseq
files
updated 9.2 years ago by
jayme.rickman
• 0 • written 9.2 years ago by
BioinfGuru
▴ 70
6 results • Page
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Answer: NUPOP usage
by
shepherl
4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker?
by
fnfgame
• 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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