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GDCquery
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0
votes
2
replies
3.2k
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Workflow type=Star_counts, I want to download FPKM or TPM values, but star_counts for which?
GDCquery
2.4 years ago
yuanyuan
• 0
0
votes
0
replies
1.2k
views
TCGAbiolinks specific mutation query
TCGAbiolinks
TCGA
Mutation
GDCquery
rnaseq
5.6 years ago
Yonatan Amzaleg
• 0
0
votes
0
replies
1.5k
views
Error in value[[3L]](cond) : GDC server down, try to use this package later
GDCquery
6.4 years ago
sechenmo
• 0
0
votes
0
replies
770
views
how include slicing to manifest
gdcquery
6.6 years ago
dvortsov
• 0
1
vote
2
replies
1.8k
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TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 7.0 years ago by
eshelden
▴ 40 • written 7.0 years ago by
jrlarsen
▴ 10
5 results • Page
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Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
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