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GDCquery
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reset
0
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2
replies
4.3k
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Workflow type=Star_counts, I want to download FPKM or TPM values, but star_counts for which?
GDCquery
3.4 years ago
yuanyuan
• 0
0
votes
0
replies
1.4k
views
TCGAbiolinks specific mutation query
TCGAbiolinks
TCGA
Mutation
GDCquery
rnaseq
6.6 years ago
Yonatan Amzaleg
• 0
0
votes
0
replies
1.9k
views
Error in value[[3L]](cond) : GDC server down, try to use this package later
GDCquery
7.4 years ago
sechenmo
• 0
0
votes
0
replies
899
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how include slicing to manifest
gdcquery
7.6 years ago
dvortsov
• 0
1
vote
2
replies
2.1k
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TCGABiolinks::GDCquery() suddenly sending back unknown error
software error
error
tcgabiolinks
GDCquery
updated 8.0 years ago by
eshelden
▴ 40 • written 8.0 years ago by
jrlarsen
▴ 10
5 results • Page
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Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated
by
shepherl
4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts
by
Michael Love
43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts
by
empty_mt
• 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts
by
Michael Love
43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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