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GOfuncR
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question about the refined outputs from GOfuncR package
GOfuncR
2.6 years ago • updated 23 months ago
capricygcapricyg
▴ 10
0
votes
2
replies
839
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Graphically Represent p-values from plot_annot_score in package GOfuncR
GOfuncR
plot_anno_scores
plot_stats
updated 5.6 years ago by
steffi_grote
• 0 • written 5.6 years ago by
rbenel
▴ 40
0
votes
1
reply
700
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 19 months ago by
Basti
▴ 780 • written 19 months ago by
yeluo
• 0
1
vote
3
replies
657
views
GOfuncR fails to build on Mac OS
GOfuncR
updated 3 months ago by
Steffi Grote
▴ 10 • written 8 months ago by
Marek Gierlinski
▴ 30
0
votes
1
reply
534
views
Gene enrichment analysis
analysis
R
GOfuncR
updated 11 months ago by
Lluís Revilla Sancho
▴ 730 • written 11 months ago by
Eliza
• 0
5 results • Page
1 of 1
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Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
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Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
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Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
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Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
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Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
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Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
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Rsubread counting peaks ATACseq
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