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GOfuncR
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question about the refined outputs from GOfuncR package
GOfuncR
2.6 years ago • updated 23 months ago
capricygcapricyg
▴ 10
0
votes
2
replies
844
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Graphically Represent p-values from plot_annot_score in package GOfuncR
GOfuncR
plot_anno_scores
plot_stats
updated 5.7 years ago by
steffi_grote
• 0 • written 5.7 years ago by
rbenel
▴ 40
0
votes
1
reply
706
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 20 months ago by
Basti
▴ 780 • written 20 months ago by
yeluo
• 0
1
vote
3
replies
674
views
GOfuncR fails to build on Mac OS
GOfuncR
updated 3 months ago by
Steffi Grote
▴ 10 • written 8 months ago by
Marek Gierlinski
▴ 30
0
votes
1
reply
540
views
Gene enrichment analysis
analysis
R
GOfuncR
updated 11 months ago by
Lluís Revilla Sancho
▴ 730 • written 11 months ago by
Eliza
• 0
5 results • Page
1 of 1
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Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Answer: ChAMP not available for bioconductor 3.19
by
shepherl
3.9k
See https://support.bioconductor.org/p/9158324/#9158336 . We have reached out to goseq to fix the package; we have a community member …
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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