Bioconductor GSVA

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397

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GSVA

12 days ago • updated 10 days ago Alex • 0

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461

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GSVA

updated 15 days ago by James W. MacDonald 65k • written 17 days ago by Lucy ▴ 60

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599

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ssgsea GSVA biotype proteincoding msigdb

updated 4 months ago by Robert Castelo ★ 3.3k • written 4 months ago by snijesh ▴ 20

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394

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GSVA

updated 7 months ago by Robert Castelo ★ 3.3k • written 8 months ago by Heba • 0

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1.2k

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GSVA RNASeq limma

updated 9 months ago by Gordon Smyth 50k • written 9 months ago by Jonathan ▴ 10

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1.6k

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escape UCell GSVA

updated 4 months ago by arina • 0 • written 14 months ago by Omer • 0

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1.8k

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GSVA

updated 7 weeks ago by Moritz ▴ 10 • written 2.9 years ago by resa • 0

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20k

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ssgsea gsva piano egsea

updated 4 months ago by amin8w ▴ 10 • written 6.8 years ago by sina.nassiri ▴ 130

8 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0