Bioconductor Gene ID

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edger differential expression TCGA Gene ID

updated 3.7 years ago by James W. MacDonald 64k • written 3.7 years ago by fawazfebin ▴ 60

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rnaseq EST gene Id

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by NS ▴ 60

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gene ID hgu133plus2.db

updated 9.0 years ago by James W. MacDonald 64k • written 9.0 years ago by nicolas.julien.jung • 0

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Comment: Ensembl down??? by James W. MacDonald 64k

I normally caution against mapping between annotation sources (NCBI and Ensembl), as it usually doesn't work well. However, it is possible.…

Answer: NCBI protein conversion to CDNA and NCBI gene (in R) by James W. MacDonald 64k

I already showed you how to do this for gene symbols, and it's analogous for any other annotation ID. Please see the `AnnotationDbi` [vigne…

Comment: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

This is a large package, and when downloading and installing large packages it's often the case to get timeouts. Try setting a longer time …

Comment: How does Deseq2 deal with the row with zero when calculating size factors by ATpoint ★ 3.6k

> Because I found that if there is at least one gene without zero among all of the samples, the deseq2 runs smoothly. No, it doesn't. ``…

Comment: Obtaining rsIDs with ENSG and variant ID information by bd2000 • 0

Thank you for your answer. I've tried to download the package but it didn't work: Error in download.file(url, destfile, method, mode =…

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Answer: biomaRt not working - lazy table error

Answer: Differential gene expression analysis

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Popular Question to Robert Castelo ★ 3.0k