Showing : GeneAnswers • reset
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geneanswers
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GeneAnswer for bacteria metagenomes
geneanswers metagenome kegg
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Re: GenesAnswers for Arabidopsis!
GeneAnswers annotation Arabidopsis GO
8.9 years ago lhuang7 ▴ 50
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Gene Ontologies exploration
goProfiles GeneAnswers goProfiles GeneAnswers
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[Geneanswers] About the meaning of colours in networks
Network GeneAnswers Network GeneAnswers
11.5 years ago Enrico Ferrero ▴ 10
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help ith GeneAnswers / annotation package
Annotation GO oligo GeneAnswers Annotation GO oligo GeneAnswers
11.6 years ago Ingrid Mercier ▴ 60
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question about getGOList in GeneAnswers
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Pie chart
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question about xvfb-run GeneAnswers
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NCI pathways to graphNEL
Pathways graph Rredland GeneAnswers Pathways graph Rredland GeneAnswers
13.3 years ago laurent jacob ▴ 100
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Error running GeneAnswers and Rgraphviz
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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