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NCI pathways to graphNEL
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13.3 years ago laurent jacob ▴ 100
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question about xvfb-run GeneAnswers
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Gene Ontologies exploration
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GeneAnswer for bacteria metagenomes
geneanswers metagenome kegg
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Error running GeneAnswers and Rgraphviz
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categories can not be recognized in Bioconductor/GeneAnswers
geneanswers
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Re: GenesAnswers for Arabidopsis!
GeneAnswers annotation Arabidopsis GO
8.9 years ago lhuang7 ▴ 50
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Pie chart
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12.6 years ago Guest User ★ 13k
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question about getGOList in GeneAnswers
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12.1 years ago Zhi Zhang ▴ 70
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help ith GeneAnswers / annotation package
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11.6 years ago Ingrid Mercier ▴ 60
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[Geneanswers] About the meaning of colours in networks
Network GeneAnswers Network GeneAnswers
11.5 years ago Enrico Ferrero ▴ 10
11 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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