Bioconductor GenomicRange

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genomicrange

updated 4.0 years ago by Kevin Blighe ★ 3.9k • written 4.0 years ago by AZ ▴ 30

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DESeq2 version3.16 installation bioconductor GenomicRange

updated 16 months ago by James W. MacDonald 65k • written 16 months ago by hong • 0

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genomicrange intersect

updated 4.1 years ago by James W. MacDonald 65k • written 4.1 years ago by AZ ▴ 30

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GenomicRange GenomicRanges

3 months ago • updated 12 weeks ago mat149 ▴ 70

4 results • Page 1 of 1

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Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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