Showing : GenomicRanges • reset
0
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Reproducibility of code in various Bioconductor versions
VariantAnnotation SNPlocs.Hsapiens.dbSNP155.GRCh38 dbSNP GenomicRanges
updated 18 days ago by 53k • written 19 days ago by • 0
2
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3
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709
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Guitar R package requires update due to dependency GenomicFeatures
GenomicFeatures Guitar txdbmaker GenomicRanges
written 10 weeks ago by ▴ 10
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1
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438
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Job: Bioinformatician at the Lausanne University Hospital
GenomicRanges JobPosting
written 3 months ago by ▴ 20
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1
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416
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Finding duplicated entries in GRangesList
GenomicRanges
updated 3 months ago by ★ 4.0k • written 6 months ago by • 0
5
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6
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Merge multiple genomic intervals if overlapping more than xx percents
genomicranges
written 10.8 years ago by ▴ 140
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4
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How to left_join a tidySummarizedExperiment with a GRanges object by seqnames and start (tidyverse-style)?
GenomicRanges tidySummarizedExperiment tidyomics
10 months ago • updated 6 months ago Kateřina • 0
4
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GAlignments Cigar to GRanges
GenomicRanges cigarRangesAlongReferenceSpace GenomicAlignments Cigar
10 months ago pineiroalejandro ▴ 10
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Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma probe DMRcate GenomicRanges DifferentialMethylation
10 months ago jamiecatalano2 • 0
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4
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1.4k
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fast apply on RleList
GenomicRanges RleList
11 months ago story.benjamin ▴ 20
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Having Trouble Using CNE12() and CNE21() in CNEr
GenomicRanges CNEr
11 months ago 1324087964 • 0
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Answer: Is it still possible to do batch correction for my data? by Gordon Smyth 53k
I agree with the comments from James MacDonald, but I will add that if you use the standard linear model correction for batch ``` design <-…
Answer: specifying refColumn in calcNormFactors() by Gordon Smyth 53k
Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…
Answer: Sex prediction in sesame for EPICV2 by Tim Peters ▴ 230
Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…
Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0
Thank you, I appreciate your time and help.
Comment: Convergence Issues and Model Selection DESeq2 by Michael Love 43k
> out of my 30,229 genes, 795 (2.6%) are better explained ... Not exactly. Frequentist statistics is not symmetric in this way. If it were…
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DiffBind dropping peaks in ATAC-seq data
A: decideTests() options in LIMMA
A: Removing cell cycle genes in large data set integration
A: Removing cell cycle genes in large data set integration
Answer: Quick two questions on limpa
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