Bioconductor HDF5Array

Showing : HDF5Array • reset

4

votes

6

replies

660

views

HDF5Array

updated 7 weeks ago by Akshay • 0 • written 5 months ago by Sarah ▴ 10

4

votes

13

replies

1.8k

views

HDF5Array DelayedArray

updated 7 months ago by Hervé Pagès 16k • written 2.6 years ago by Koki ▴ 10

3

votes

3

replies

192

views

HDF5Array BiocGenerics BiocParallel Biobase

19 days ago • updated 13 days ago jacques.imbert • 0

0

votes

2

replies

504

views

HDF5Array

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by gabriele.favaretto • 0

4 results • Page 1 of 1

Recent ...

Replies

Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0

Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…

Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k

I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …

Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k

But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…

Comment: log2FoldChange value is way too different when compared with counts(dds) by HAK • 0

Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…

Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call by ATpoint ★ 4.1k

Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…

Votes

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

SPIA plotP giving error

Answer: Fold change calculation in Diffbind vs. DESEQ2?

C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB

Awards • All

Scholar to Rory Stark ★ 5.2k

Popular Question to tangming2005 ▴ 190