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HI-C
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diffHic ICE normalization PCA with NAs
diffHic
normalization
pca
NAs
HI-C
updated 6.6 years ago by
Aaron Lun
★ 29k • written 6.6 years ago by
inzirio
▴ 10
1
vote
5
replies
2.3k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
7.4 years ago
ta_awwad
▴ 10
3
votes
2
replies
3.2k
views
Best way to get HiCUP-mapped Hi-C data into diffHiC
hicup
hi-c
diffhic
homer
8.4 years ago
e.jacobson
▴ 10
1
vote
4
replies
2.5k
views
Is there a way to align Hi-C half heatmaps to Gviz track?
Gviz
Hi-C
Heatmap
updated 9.6 years ago by
Nicolas Servant
▴ 260 • written 9.6 years ago by
Merienne Nicolas
▴ 120
1
vote
10
replies
2.9k
views
FourC object from scratch
hi-c
HiTC
fourcseq
10.1 years ago • updated 10.0 years ago
Nicolas Servant
▴ 260
2
votes
4
replies
2.2k
views
diffHic-package_PreparePairs-function-error:"missing chromosomes in cut site list"
diffHic
PreparePairs
Hi-c
cutGenome
10.5 years ago • updated 10.4 years ago
rulicosentino
• 0
6 results • Page
1 of 1
Recent ...
Replies
Comment: upstream git branches of bioc-release
by
TrentonCollier99
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴ 10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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