Bioconductor HI-C

Showing : HI-C • reset

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1.9k

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hicup hi-c diffhic homer

5.9 years ago e.jacobson • 0

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1.7k

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hi-c HiTC fourcseq

7.6 years ago • updated 7.5 years ago Nicolas Servant ▴ 260

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1.5k

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diffHic PreparePairs Hi-c cutGenome

8.0 years ago • updated 7.9 years ago rulicosentino • 0

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1.4k

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Gviz Hi-C Heatmap

updated 7.1 years ago by Nicolas Servant ▴ 260 • written 7.1 years ago by Merienne Nicolas ▴ 120

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948

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Hi-C HiTC

4.9 years ago ta_awwad ▴ 10

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602

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diffHic normalization pca NAs HI-C

updated 4.1 years ago by Aaron Lun ★ 28k • written 4.1 years ago by inzirio ▴ 10

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Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth thank you, yes, please find the targets frame below. Basically, I want to create a design matrix and binarize by 0 and 1 to be…

Comment: WGCNA: many over and under-expressed features in modules of a signed network by andres.firrincieli ▴ 50

answered in Biostars: https://www.biostars.org/p/9564943/

Comment: Multitasking and Rbwa by Jean-Philippe Fortin • 0

Indeed, one can pass additional arguments to the `bwa_aln` function in `Rbwa`: bwa_aln(type="single", index_prefix=index_pr…

Comment: biomaRt error: database disk image is malformed by Emile • 0

UNBORKING the bioMaRt cache `biomaRt::biomartCacheClear()` also fixes the troubles with PANTHER.db installation which have also something t…

Answer: Proteomics data with NA values by Laurent Gatto 1.6k

- First, you need to assess how many missing values you have. - I would recommend not to impute your data by 0 (or any arbitrary small …

Votes

Answer: Question on constructing design matrix and defining contrasts for analysis

WGCNA: many over and under-expressed features in modules of a signed network

Comment: WGCNA: many over and under-expressed features in modules of a signed network

Answer: DESeq2 or edgeR for Presence and Absence of Proteins

Answer: Normalized counts from LRT or Wald test?

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Teacher to James W. MacDonald 63k