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HiTC
•
reset
0
votes
3
replies
399
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
8 months ago
shikha
• 0
0
votes
6
replies
520
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
3.0 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
748
views
A/B compartments computation: control settings
HiTC
updated 19 months ago by
ahmed.abbaselmahdi
• 0 • written 3.6 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
843
views
visualize Hi-C .cool file in R
Hi-C
HiTC
4.6 years ago
ta_awwad
▴ 10
0
votes
2
replies
760
views
Gene Density computation in pca.hic
HiTC
4.7 years ago
cath
▴ 30
0
votes
5
replies
996
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 4.9 years ago by
Nicolas Servant
▴ 260 • written 4.9 years ago by
René Wiegandt
• 0
3
votes
5
replies
914
views
normLGF yields non-symetric matrices
HiTC
updated 5.8 years ago by
Nicolas Servant
▴ 260 • written 5.8 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
1.6k
views
FourC object from scratch
hi-c
HiTC
fourcseq
7.3 years ago • updated 7.2 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
899
views
FourC object from scratch
hic-c
hitc
fourcseq
7.3 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
1.6k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
7.4 years ago
Bogdan
▴ 660
0
votes
0
replies
709
views
normalization method for 5C
HiTC
7.5 years ago
Bogdan
▴ 660
0
votes
0
replies
854
views
Problem importing 5C data
importing
HiTC
7.8 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.2k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
962
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 10.0 years ago by
Valerie Obenchain
★ 6.7k • written 10.0 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.0k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 and heatmap for multiple comparisons
by
artem.vorobyev
• 0
this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…
Comment: athPkgBuilder data source :missing probesets
by
nicklesteele532
• 0
> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…
Comment: Why in Bioconductor community people rarely upvote questions?
by
Hervé Pagès
16k
BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …
Answer: DESeq2 and heatmap for multiple comparisons
by
swbarnes2
★ 1.2k
If you want to know what genes are different between lesion and treated, compare them to each other.
Votes
Comment: recount 3 protect read length metadata
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
C: Batch correction in DESeq2
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
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Chris
• 0
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Malcolm Cook
★ 1.6k
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Hervé Pagès
16k
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Hans-Ulrich Klein
▴ 330
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JoeMG
• 0
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