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HiTC
•
reset
0
votes
3
replies
1.3k
views
HiTC import is throwing error
HiTC
importC
sparseMatrix
3.0 years ago
shikha
• 0
0
votes
6
replies
1.3k
views
HiTC problem exporting to my5C
HiTC
HiC-Pro
5.3 years ago
sergio.espeso-gil
• 0
1
vote
3
replies
1.9k
views
A/B compartments computation: control settings
HiTC
updated 3.9 years ago by
ahmed.abbaselmahdi
• 0 • written 5.9 years ago by
Konstantin Okonechnikov
▴ 40
1
vote
5
replies
2.1k
views
visualize Hi-C .cool file in R
Hi-C
HiTC
6.9 years ago
ta_awwad
▴ 10
0
votes
2
replies
1.5k
views
Gene Density computation in pca.hic
HiTC
7.0 years ago
cath
▴ 30
0
votes
5
replies
2.0k
views
HiTC importC not working
HiTC
IRanges
windows
debian
updated 7.2 years ago by
Nicolas Servant
▴ 260 • written 7.2 years ago by
René Wiegandt
• 0
3
votes
5
replies
1.8k
views
normLGF yields non-symetric matrices
HiTC
updated 8.1 years ago by
Nicolas Servant
▴ 260 • written 8.1 years ago by
enrique.vidal
▴ 10
1
vote
10
replies
2.7k
views
FourC object from scratch
hi-c
HiTC
fourcseq
9.6 years ago • updated 9.5 years ago
Nicolas Servant
▴ 260
0
votes
0
replies
1.4k
views
FourC object from scratch
hic-c
hitc
fourcseq
9.6 years ago
Nicolas Servant
▴ 260
4
votes
20
replies
3.2k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
9.7 years ago
Bogdan
▴ 670
0
votes
0
replies
1.1k
views
normalization method for 5C
HiTC
9.7 years ago
Bogdan
▴ 670
0
votes
0
replies
1.2k
views
Problem importing 5C data
importing
HiTC
10.1 years ago
gugpuccio
▴ 10
0
votes
1
reply
2.9k
views
biocLite("TxDb.Hsapiens.UCSC.hg19.knownGene") fails
BSgenome
hexbin
BSgenome
IRanges
genomeIntervals
GenomicRanges
girafe
Rsamtools
HiTC
HiTC
updated 12.2 years ago by
Dan Tenenbaum
★ 8.2k • written 12.2 years ago by
Wim Kreinen
▴ 100
0
votes
4
replies
1.6k
views
genome_intervals and GRange objects/HiTC package
Annotation
HiTC
Annotation
HiTC
updated 12.3 years ago by
Valerie Obenchain
★ 6.8k • written 12.3 years ago by
Hermann Norpois
▴ 170
0
votes
1
reply
1.5k
views
HiTC: problem with HTClist
HiTC
HiTC
updated 12.3 years ago by
Martin Morgan
25k • written 12.3 years ago by
Hermann Norpois
▴ 170
15 results • Page
1 of 1
Recent ...
Replies
Comment: Heatmap of rnaseq data with z-score scale
by
Paul Harrison
▴ 110
There can be considerable differences between datasets just due to different handling, sequencing method, batch effects, etc etc, and this …
Comment: Memory issue while using "quickcluster" and "computeSumFactors" functions on sin
by
ATpoint
★ 4.8k
What is lac cells? You mean 7000-9000 cells? Please check first that the function runs OOM even without any of these multicore options set.…
Comment: parameters of filterByExpr
by
caroline.zanchi
▴ 10
It worked, I think I finally understand and accept that fact. Sorry and thank you again !
Comment: parameters of filterByExpr
by
Gordon Smyth
52k
You seem to be coming back to the same fixed (but incorrect) idea of what filterByExpr() should be doing. I have tried to explain that filt…
Answer: edgeR in DMR mode - replicates give batch effect - how to build design matrix wi
by
Gordon Smyth
52k
modelMatrixMeth() works correctly. The second replicate factor has not been lost. Please do not make ad hoc manual modifications to the de…
Votes
Comment: Heatmap of rnaseq data with z-score scale
Answer: parameters of filterByExpr
Comment: Heatmap of rnaseq data with z-score scale
Answer: LogFC values in edgeR - w/wo intercept
How to formulate 2 factor nested design in DESeq2
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Konstantinos Yeles
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ATpoint
★ 4.8k
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rjoana
• 0
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Gordon Smyth
52k
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Maria Doyle
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