Biostar KEGG.db

Showing : KEGG.db • reset

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366

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KEGG.db KEGG KEGGPATHNAME2ID KEGGPATHID2EXTIT

updated 2.3 years ago by James W. MacDonald 60k • written 2.3 years ago by tobias-messmer ▴ 10

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757

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KEGG kegg.db kegggraph

4.4 years ago Raymond ▴ 20

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957

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pfam go.db kegg.db

updated 4.8 years ago by Martin Morgan 25k • written 4.8 years ago by josefina.lascanomaillard • 0

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1.8k

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affy annaffy go.db kegg.db

updated 5.2 years ago by James W. MacDonald 60k • written 5.2 years ago by Angela • 0

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824

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software error download.kegg() kegg.db use_internal_data = FALSE

updated 6.0 years ago by Guangchuang Yu ★ 1.2k • written 6.0 years ago by happylittlepig • 0

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3.6k

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KEGG.db KEGG id

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by NS ▴ 60

6 results • Page 1 of 1

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Comment: bootstrapNullAlternativeModel() returns error by Tobias ▴ 30

The input data to the function looks like: ``` > preproc_df # A tibble: 314,317 × 16 representative `Total Peptides` `Total Spectral Co…

Comment: Error "DESeqDataSetFromMatrix" function not found by Basti ▴ 330

Do you have any error when you run `library(DESeq2)` or `BiocManager::install("DESeq2")` ?

Answer: Compare different cell lines with tissues using limma by Gordon Smyth 45k

You just need to define contrasts corresponding to the comparisons you want to make. Just define ``` design <- model.matrix(~0+cellType) c…

Comment: What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enric by Bhavana • 0

Thank you so much for your response, I will keep in mind regarding making posts about Bioconductor packages! :)

Comment: Function simplify fails when argument ont is set to "ALL" in enrichGO function i by pengmin.wang.1 • 0

sorry, I post my question here, maybe not related to the topic. Now I'm doing enrichment using clusterprofiler and WebGestalR. Here, x <- u…

Votes

A: Samples without pair in paired design experiment

A: weird model design for DE analysis

weird model design for DE analysis

block design to test two factors with limma

using duplicateCorrelation with limma+voom for RNA-seq data

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Teacher to Gordon Smyth 45k