Bioconductor Lapply

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lapply GRanges

updated 23 months ago by Hervé Pagès 16k • written 23 months ago by 16301050225 • 0

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Exprs Lapply FCS for loop flowcore

updated 6.5 years ago by Jiang, Mike ★ 1.3k • written 6.5 years ago by Wilson Yeo • 0

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lapply

8.4 years ago Wilson Yeo • 0

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…

Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

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biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

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Scholar to James W. MacDonald 65k

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