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DESeq2 with multiple variable give me different results
Factor
Levels
Dispersionestimates
DESeq2
2.5 years ago
rafaelsolersanblas
▴ 50
0
votes
3
replies
847
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I have a problem when I run DESeq2 with one variable with 8 levels, I can't find the contrast for any comparison with level 8
Contrast
factors
levels
19 months ago • updated 18 months ago
Edgar
• 0
2
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2
replies
1.4k
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How to extract factor levels of coldata from deseq object?
deseq2
levels
factor
colData
updated 5.2 years ago by
Michael Love
42k • written 5.2 years ago by
ariel
▴ 20
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Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
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I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
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sajadahmad41454
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thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
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by
swbarnes2
★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
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